| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2498 |
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| Symbol | |
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| ID | 3971080 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 2709323 |
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| End bp | 2712448 |
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| Gene Length | 3126 bp |
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| Protein Length | 1041 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637925606 |
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| Product | acriflavin resistance protein |
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| Protein accession | YP_532368 |
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| Protein GI | 90423998 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.224537 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.54052 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCTCT CCGAAGTCTG CATCCGCCGC CCGGTGATGA CGACGCTGAT CACCGCGTCG
ATCATCGCCT TCGGCATTTT CGGCTTCCGG CTGCTGCCGG TCTCGGCGCT GCCCAAGGTC
GACTTCCCCA CCATCGCAGT GACCGCGACG CTGCCCGGCG CCAGCGCCGA CACCATGGCG
GCGTCGGTCG CCGGCGTGAT CGAGCGGCAG CTCTCGACCA TCGCCGGGAT CTCGTCGATG
TCGTCGAGTT CGTCGCAGGG CACCAGCGCG ATCACCATCC AGTTCGACCT CAACCGCAAC
ATCGACGCCG CGGCGCTCGA CGTGCAGACC GCGCTGACCA TCGCGCAGCG CCGGCTGCCG
ATCGAGATGA CGACGCCGCC GAGCTTCCGC AAGGTGAACC CGGCCGACTT TCCGGTGCTG
TTCGTGTCGC TGAGTTCGGC GACGCTGCCG CTGTCCGCGG TCAACGAATA TGGCGACATC
ACCATCGGCC AGGCATTGTC GCAGGTGCCC GGCGTGGCGC AGGTGATGAT CTTCGGCGCG
CAGAAATTCG CCATCCGCGT GCAAGCCGAT CCGGAAGCCG CGGCGGCTCG GGGGCTGTCG
CTGGAAGACA TCCGCACCGC GGTGGCGCGG GCCAATTCCT CGACCCCGGT CGGCACCCTG
AACGGGCCGA AGCAGGACAT CTCGCTGCAG GCCTCCGGCC AGATGGACAA GGCGGTCGAC
TATCGCCACA TCGTGGTGGC GTGGCGCAAC GGCTCGCCGG TCAAGCTCGA CGAGGTGGCG
CGGATCTACG ACAGCGTCGA GAACGACAAG ATCGCCACCT GGCTGAACGA CACCCGCGCC
ATTGTGCTGG CGATCCAGAA ACAGCCCGAC GCCAATACGG TGGCGGTGGT CGACGGCGTC
CGCGCCAAGC TGCCGGGGCT GCGCGCGCAG ATCCCGCCCT CGATCAACGT CAGCGTGATG
ATGGACCGTT CGGTATCGGT GCGCCAGGCG GTCGCCGACG TCGAGGAGAC GCTGCTGATC
GCCGTGGTGC TGGTGATCCT GGTGATCTTT TTGTTCCTGC GCTCGGCCTG GGCGACCTTC
ATCCCCGCGC TGGCGGTGCC GATCTCGCTG CTCGGCACCT GCGCGGTGAT GTACATGCTG
GACTTCTCCA TCAACAACAT GACGCTGCTG GCGCTGACGC TGTCGGTCGG CTTCGTGGTC
GACGACGCCA TCGTGATGCT GGAGAACATC GTCCGCCACA TCGAACACGG CATGCGGCCG
TTCGAGGCGG CGCTGAAGGG CGCCCGCGAG ATCGGCTTCA CCATCATTTC GATCACCTTC
TCGCTGATCG CGGTGTTCAT CCCGGTGCTG CTGATGGGCG GCATCGTCGG CCGCGTGTTC
CGCGAATTCG CCGTGACCAT CGCCGCCGCG ATCGTGGTGT CTGGCTTCGT GTCGCTGACG
CTGACGCCGA TGCTGTGCGC GCGGGTCTTG AAGGCGCACG ATCCCGCCAA GAAGGAGAAC
GTCGTCCTGC GGGTGTTCGA GGCGATGTTC GCCGCCTGGC TGCGCGGCTA CGAATGGGCG
CTCGACCACG TCTTGAAGCG CAAGGCGCTG ATGCTGCTGG CAACGCTGGC GACGCTCGGC
GGCACCGTCT ATCTCTACAT GATCGTGCCG AAGGGCTTCT TTCCGCAGGA GGACACCGGC
TTTCTGACCG GCGTCACCGA GGCCGCCACC GACACCTCGT TCGAGGCGAT GGCGGTGCGG
CAGCAGGCGC TGGTCAAGAT CCTGAAATCC GATCCGGCGG TCGACTACAT CAACTCAACG
GTCGGCTCCG GCGGCCCCAA TCCGACCGGC AATTACGGCA GGCTGTTCAT CGCGCTGAAG
CCGCAGGGCG AGCGCGAGAG CGCGCCGGTG GTGATGGCGC GGCTGCGCGA GACCGCGATG
CAGGTCCCTG GATTGCAGGC GTTCTTCCAG AGCATCCAGA ATCTGAACAT CGGCGGTCGG
CCGTCGAAGA GTCAGTATCA ATACGTCTTG CAGAGCGGCG ATACCGAGGC GCTGTATCGG
CTGGCGCCGG AGATGCGCGA CAAGATCGCC AAGGTGCCGG GGCTCTTGGA TGTCACCACC
GACCTCTACA TCAAGAATCC GCAGATGACG GTGGAGATCG ACCGCGAGAA GGCCGCGGTC
TACGGCATCA CCGTCGATCA GGTGCGCAAC CAGCTCTACA ACGCCTACGG CTCGCGCCAG
GTCGGCACCA TCTACATGCC GTCGAACGAC TACCAGATCA TCCTGGAAGC GCAGCCGCAG
TTCCGGGTCG ATCCGTCCGA TCTGTCGAAG CTCTACATGA AGACGGCGAA CAACCAGACC
ATTCCGATGG ACGTGGTGGC GAAGCTGGTG CCGACGGTCG GGCCGCTGCA GATCAACCAC
CAGGGCCAGC AGCCGGCGGT GACGATCTCG TTCAACCTCG CGCCCGGCCA TTCGCTGGGC
TACGCGGTCG ATGAAATCAC CAAGATCGAG GCGCAGTCCA ATCTGCCGGT GACCATCGCC
ACCGGCTTCT CCGGCACCGC GCAGGTGTTT CAGGATAGCT TGCGCGGGCA GGGCGTGCTG
ATCCTGGCCG CGGTGTTCGC CGCCTTCGTG ATCCTCGGGA TTCTCTATGA GAGCTTCATC
CACCCGATCA CCATCATCTC CGGCCTGCCG TCGGCCGGCA TCGGGGCGAT CCTGACGCTG
ATGTTGTTCA ACATGGAGTT GTCGGTGATC GCGATGATCG GCATCGTCAT GCTGGTCGGC
ATCGTCAAGA AGAACGCCAT CATGATGGTC GACTTCGCGC TGGAGCGGCG GCGGTTCGGG
TTGTCCGCCG AACAGGCGAT CCGCGAGGCG GCGCTGCTGC GGTTTCGCCC GATCATGATG
ACCACCTTCG CGGCGATCTT CGGCACGCTG CCGATCGCGC TGGGCGCCGG CGCCGGCGCC
GAACTGCGCC AGCCGCTCGG CGTCGCGGTG GTCGGCGGGC TGTGCGTCTC GCAGCTGTTG
ACGCTGTTCA TCACGCCGGT GATCTACATC TATCTCGACA AGTTCGACAG GAGGCTGAAG
CGCAAGCTGG AGCCGCAGCT CGATGCGCTG AACGAGGACC GCCCGCGGAT CGCGGCGGCG
GAATAG
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| Protein sequence | MTLSEVCIRR PVMTTLITAS IIAFGIFGFR LLPVSALPKV DFPTIAVTAT LPGASADTMA
ASVAGVIERQ LSTIAGISSM SSSSSQGTSA ITIQFDLNRN IDAAALDVQT ALTIAQRRLP
IEMTTPPSFR KVNPADFPVL FVSLSSATLP LSAVNEYGDI TIGQALSQVP GVAQVMIFGA
QKFAIRVQAD PEAAAARGLS LEDIRTAVAR ANSSTPVGTL NGPKQDISLQ ASGQMDKAVD
YRHIVVAWRN GSPVKLDEVA RIYDSVENDK IATWLNDTRA IVLAIQKQPD ANTVAVVDGV
RAKLPGLRAQ IPPSINVSVM MDRSVSVRQA VADVEETLLI AVVLVILVIF LFLRSAWATF
IPALAVPISL LGTCAVMYML DFSINNMTLL ALTLSVGFVV DDAIVMLENI VRHIEHGMRP
FEAALKGARE IGFTIISITF SLIAVFIPVL LMGGIVGRVF REFAVTIAAA IVVSGFVSLT
LTPMLCARVL KAHDPAKKEN VVLRVFEAMF AAWLRGYEWA LDHVLKRKAL MLLATLATLG
GTVYLYMIVP KGFFPQEDTG FLTGVTEAAT DTSFEAMAVR QQALVKILKS DPAVDYINST
VGSGGPNPTG NYGRLFIALK PQGERESAPV VMARLRETAM QVPGLQAFFQ SIQNLNIGGR
PSKSQYQYVL QSGDTEALYR LAPEMRDKIA KVPGLLDVTT DLYIKNPQMT VEIDREKAAV
YGITVDQVRN QLYNAYGSRQ VGTIYMPSND YQIILEAQPQ FRVDPSDLSK LYMKTANNQT
IPMDVVAKLV PTVGPLQINH QGQQPAVTIS FNLAPGHSLG YAVDEITKIE AQSNLPVTIA
TGFSGTAQVF QDSLRGQGVL ILAAVFAAFV ILGILYESFI HPITIISGLP SAGIGAILTL
MLFNMELSVI AMIGIVMLVG IVKKNAIMMV DFALERRRFG LSAEQAIREA ALLRFRPIMM
TTFAAIFGTL PIALGAGAGA ELRQPLGVAV VGGLCVSQLL TLFITPVIYI YLDKFDRRLK
RKLEPQLDAL NEDRPRIAAA E
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