| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2497 |
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| Symbol | |
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| ID | 3971079 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 2708189 |
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| End bp | 2709319 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637925605 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_532367 |
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| Protein GI | 90423997 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0156219 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.535826 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAGC GTAATCGGAT CGTCGTCGCA GCTCTGCTCG GCATCGTCGT GGTCGGCTCC
TATCTGACGC GGTCGTCCTG GCTGGCGGCC AGCGTCAATG CCCAGGCGCC GCAACGCGCC
CGGGTGGTGG CGGTCGAACT CGCCCGCGCC GAACGTCGAC AAGTGCCGAT CGACGTCGAC
GCCATCGGCA TGGTGACGCC GATTTCCAGC GTGGCGCTGA AATCGCGGTT AGAGACCACC
ATCGTGGCGG TGCATTTCCA GGACGGCGCC AGGGTCGAAG AGGGCCAGCT GCTGTTCACG
TTGGATTCAC GGCAGCTCGA CGCCCAGATC GAGCAGGCCG AAGGCAATCT GGCGCGCGAC
CGCGCGCAGC TCGCCGGCGC CGACCGCGAC CTCAAGCGCT ATGGCGAGCT GATCGGCAAG
GGCGCCACCA CCCAGGTCAA CCTCGATAAC GCCAAGACCC AGTCCGACAT CCTCAAAGGC
ACCATCCAGG CCGACCAGTC GGCGCTGGAC AATCTGCAGG TCCAAAAAAG CTTCACCACG
ATCCGCGCGC CGTTCGCCGG CCGCATCAGC GCCGCCAACG TCAAGATCGG CAATTTCGTC
CGGCCGGCCG ACACCGTGCC GCTCGCCACC ATCAACCAGA TGGCGCCGGT CTACGTCTCG
TTCGCGGTTC CGCAGCGGGT GCTGGCCGAT CTGCGCGACG CCATCGCCGC CGACACCACC
AAGCTCATCG CGACCATTCC GGGCAGCGGG CGCTCCGAGA CCGGCAAGGT GGCGATGGTG
GAGAATGCGG TGGATTCCAC CACCGGCATG GTCACGGTCC GCGGCATCAT GGACAACGGC
AACGAGACGC TGTGGCCGGG CACGCTGGTC ACCACCAAGC TGATCGTGCG CAGCGAGACC
GCGGTGGTGG TGCCGACCGT GGCGGTGCAG CGCAGCCAGA CCGGCAATTT CGTGTTCGTG
GTCAAGGACG GCACCGCGCA TGTGCAGCCG GTCAAGGTCG ATCGCACCTC ACAAGGGCTG
TCGGTGATCG CCGAGGGGCT CCGCGGCGGC GAAGAGGTGG TGACTGACGG TCAATTGCTG
CTGTCGGACG GCACCAAGGT CGAGGCGCGC GCCCGCAAAG CCGGGGCCTG A
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| Protein sequence | MNKRNRIVVA ALLGIVVVGS YLTRSSWLAA SVNAQAPQRA RVVAVELARA ERRQVPIDVD
AIGMVTPISS VALKSRLETT IVAVHFQDGA RVEEGQLLFT LDSRQLDAQI EQAEGNLARD
RAQLAGADRD LKRYGELIGK GATTQVNLDN AKTQSDILKG TIQADQSALD NLQVQKSFTT
IRAPFAGRIS AANVKIGNFV RPADTVPLAT INQMAPVYVS FAVPQRVLAD LRDAIAADTT
KLIATIPGSG RSETGKVAMV ENAVDSTTGM VTVRGIMDNG NETLWPGTLV TTKLIVRSET
AVVVPTVAVQ RSQTGNFVFV VKDGTAHVQP VKVDRTSQGL SVIAEGLRGG EEVVTDGQLL
LSDGTKVEAR ARKAGA
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