| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2481 |
|---|
| Symbol | |
|---|
| ID | 3971238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 2689471 |
|---|
| End bp | 2691075 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637925589 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_532351 |
|---|
| Protein GI | 90423981 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.236507 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.407022 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATG ATCCCGTCGT CAACGATAAG CCTGTCGATT TGACCGCGGC GCGCGAAGCG
CAACATCGCA ACGACCATTA CGACTTCATC GTCTGCGGAG CCGGTCCCGC GGGTTCGGTG
GTCGCCGCGC GGCTGGCCGA AAATCCCTCC GTGCGGGTGC TCCTGATTGA AGCCGGCGGC
AGCGACGACG TTGCCGACGT CGTGAACCCC GCGCACTGGC CGCTGAATCT CGGCTCGGAG
CGGGACTGGG GTTTCAGCGC GCAACCCAAT CCGCATCTCA ATGGCCGCTC GATCCCGCTC
AGCATGGGCA AGCTGCTGGG CGGCAGTTCG AGCATCAATG TCGGGGTGTG GGCGCGCGGC
CACAAGAACG ATTGGGAGCA TTTCGCCGCG GAGGCGGGCG ATCCGGCGTG GGGATATCAG
TCGATCCTTG CGATCTACCG GCGCATCGAG GACTGGCAGG GCGCCGACGA TCCCTTGCGC
CGCGGTCGCG GCGGCCCGGT TCACGTCCAG TCGGCCAGCG ATCCGCAGCC GGTCGCCTGC
GCCATGGTGG AGGCCGCCAA ATCGCTCGGG CTACCGACCT TCGACAGCCC CAACGGCGAG
ATGATGGAAG GTCGCGGCGG CGTCGCCATC AACGACCTGT TGGTTCGCGA CCGGCTGCGC
TCCTCGATCT ATCGCTCGTA TGTTCATCCG CGCCTCACGC AACCCAACCT GACGGTGCTG
ACGCGCGCGA TCGTCAGCAA GTTGTTATTC GAAGGCACCG CGGTGGTCGG CGTCGAGACG
GTCGAGCGAT CGGGGCGGCG TCGTTATCTG TCGGATCACG AAGTGGTGCT CTCGCTCGGC
GCGATCAATA CGCCAAAGCT GCTGATGCAG TCCGGGATCG GACCGCAAGA ACAACTTCGG
CGCCATGGCA TTGCGGTGGT TCAGCATCTG CCCGGCGTCG GTCAGAACCA TCAGGACCAT
GTGTCGTTCA ATTGCATTTT CGAATGCAAC GAGCCGCAGC CGGTCGGCCA TGGCGGCTCC
GAAGCGACCT TGTATTGGAC CAGCGAAACC GGCCTCGCGC TGCCAGACCT GTTTCAGTGC
CAAGTCGAAT TTCCCGTGCC CAGCGCCGAA ACCGCGGCGT TGGGCGTGCC GGAGCAGGGC
TGGACGATGT TTGCGGGATT GGCGCATCCC AAGAGCCGCG GTGAACTGCG GCTGTCCGGC
GCGGATGTGT TCGATCCGAT CCTGATCGAG GCCAACACGC TGTCGCACCC GGATGATCTC
GTGAACGCGC GGACCACCAT CGAACTATGC CGCGAGCTCG GCAACAGCTC CGCCTTTTCC
GGACTGGTGC GGCGCGAGGC CCTGCCGGGC AAGCTCGGCC CCGGCGCGAT GGAGGAGTTT
GCCCGCAATG CCGCCGTCAC TTTCTGGCAT CAGTCATGCA CCGCCAAGAT GGGACGCGAC
CCGATGGCCG TGGTCGACCA CCGCCTGAAG GTCTATGGGA TCGACCGGCT GCGCATCGCC
GACGCCTCGA TCATGCCTGA CGTCACCAGC GGCAACACCA TGGCGCCCTG CGTGGTGATC
GGCGAAAGAG CGGCCGAGAT GATCAAGGCC GCGCACCGGA TCTAG
|
|---|
| Protein sequence | MTDDPVVNDK PVDLTAAREA QHRNDHYDFI VCGAGPAGSV VAARLAENPS VRVLLIEAGG
SDDVADVVNP AHWPLNLGSE RDWGFSAQPN PHLNGRSIPL SMGKLLGGSS SINVGVWARG
HKNDWEHFAA EAGDPAWGYQ SILAIYRRIE DWQGADDPLR RGRGGPVHVQ SASDPQPVAC
AMVEAAKSLG LPTFDSPNGE MMEGRGGVAI NDLLVRDRLR SSIYRSYVHP RLTQPNLTVL
TRAIVSKLLF EGTAVVGVET VERSGRRRYL SDHEVVLSLG AINTPKLLMQ SGIGPQEQLR
RHGIAVVQHL PGVGQNHQDH VSFNCIFECN EPQPVGHGGS EATLYWTSET GLALPDLFQC
QVEFPVPSAE TAALGVPEQG WTMFAGLAHP KSRGELRLSG ADVFDPILIE ANTLSHPDDL
VNARTTIELC RELGNSSAFS GLVRREALPG KLGPGAMEEF ARNAAVTFWH QSCTAKMGRD
PMAVVDHRLK VYGIDRLRIA DASIMPDVTS GNTMAPCVVI GERAAEMIKA AHRI
|
|---|
| |