| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2442 |
|---|
| Symbol | |
|---|
| ID | 3971372 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 2642244 |
|---|
| End bp | 2643467 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637925550 |
|---|
| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| Protein accession | YP_532312 |
|---|
| Protein GI | 90423942 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.809903 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.321303 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCAG TTCCATTGCG AAACGCCAAA GTCGCGGCGT CGGGTGTCCG TAGCGTCAGC
GTGCTCGGGG CCACCGGGTC GATCGGCGAC AGCACGATGG ACCTGCTGCG GGCCTCGCCC
GAGCGCTACC AGGTCGAGGC GCTGACCGCG AACACCAACG TCGCCGGCCT CGCCAAGCTG
GCCCGCGAAT TCAACGCCCG CTTCGTCGCG GTGGCCGATC CCGCGCGCTT GAGCGAATTG
CGCGCGGCGC TGGCCGGAAC CGGCATCGCC TGCGGAGCAG GGGACAGCGC CATCGTCGAA
GCCGCCGAGC GGCCGGCGGA TTGGGTGATG GCGGCGGTCG CTGGCGCCGC CGGGTTGAAG
CCGACGCTGG CCGCGGTCGA CCGCGGCGCT CACGTCGCGC TCGCCAACAA GGAATGCCTG
GTTTGCGCCG GGGAATTCTT CATGGACCGC GCGGCGAAAG CCGGCGCCAC CATCCTGCCG
GCGGATTCCG AACACAACGC GCTGTTCCAA GCGCTCGCCT CCGGCAACCG CGACGAACTC
ACCAAGGTGA TCATCACCGC CTCGGGCGGC CCGTTCCGCA CCTGGGCCGC CGCCGATATC
GAGCAGGCGA CGCTGGCGCA GGCCTTGAAG CATCCGAACT GGAGCATGGG GCAGAAGATC
ACCATCGATT CGGCGTCGAT GATGAACAAG GGCCTCGAAG TGATCGAGGC GTCCTGGCTG
TTCGCGCTGT CGCCCGACGA GATCGACGTG GTGGTGCATC CGCAGTCGAT CATCCACGGC
ATGGTGGAGT TTTCCGACCG CTCGGTGGTG GCGCAACTGG GGTCGCCCGA CATGCGCACC
CCGATCGCGC ATTGCCTCGG CTGGCCCGAC CGCATCGTCG GCCGTGCCGC GCCGCTCGAC
CTCGCCAAGA TCGGAACCCT GACCTTCGAG GCGCCGGATT ATGCCCGGTT CCCTGGTTTG
AAGCTGGCCT ATGAGGCGTT GCGCGCCGGC AACGGCGCCA CCACGGTGTA CAATGCCGCC
AACGAGGTCG CGGTGGCCGC GTTCATCGCG CAGCGGATCC GGTTCGGCGC GATCGCACGC
CTGGTCGAGG AAACCATGAG TTCCTGGATC CGCGCCGGCA ATCAGGCGCC GTTGAGCTGC
GCCGACGACG CCATCGCGGT CGACCACAGC GCGCGAAATA TGGCTGCCGC GCTATTGCCT
CAAATTGCCG CAAAGGCATC CTAG
|
|---|
| Protein sequence | MSAVPLRNAK VAASGVRSVS VLGATGSIGD STMDLLRASP ERYQVEALTA NTNVAGLAKL
AREFNARFVA VADPARLSEL RAALAGTGIA CGAGDSAIVE AAERPADWVM AAVAGAAGLK
PTLAAVDRGA HVALANKECL VCAGEFFMDR AAKAGATILP ADSEHNALFQ ALASGNRDEL
TKVIITASGG PFRTWAAADI EQATLAQALK HPNWSMGQKI TIDSASMMNK GLEVIEASWL
FALSPDEIDV VVHPQSIIHG MVEFSDRSVV AQLGSPDMRT PIAHCLGWPD RIVGRAAPLD
LAKIGTLTFE APDYARFPGL KLAYEALRAG NGATTVYNAA NEVAVAAFIA QRIRFGAIAR
LVEETMSSWI RAGNQAPLSC ADDAIAVDHS ARNMAAALLP QIAAKAS
|
|---|
| |