| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2433 |
|---|
| Symbol | dnaE |
|---|
| ID | 3971421 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 2632522 |
|---|
| End bp | 2636079 |
|---|
| Gene Length | 3558 bp |
|---|
| Protein Length | 1185 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637925541 |
|---|
| Product | DNA polymerase III subunit alpha |
|---|
| Protein accession | YP_532303 |
|---|
| Protein GI | 90423933 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.184139 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTGGCGAC CCCGGTCGCC GCCGTCCTCA GTTCCCTGGA TTGACACCGC GCCCATGACC
AATGCCGGCT TCGTTCATCT GCACGTGCAT TCGGCGTATT CGCTGCTGCG GGGCTCGATC
AAGGTCGCCA AGCTGTGTGA GCTCGCCAAG GCCGACCATC AGCCGGCGCT GGCGCTGACC
GACACCGACA ACATGTTCGG GGCGCTGGAA TTCTCCGAGA AGATGGCGGG CTACGGCATC
CAGCCGATCG TCGGCTGCGA ATTGGCGGTC GATTTCGGCG ATCAGGATCC CAACGCCCGC
AACGCGCTTT CGGCGGCGCC GTCGCGGATC GTGCTGCTGG CGGCGCGCGA GCGCGGCTAC
CGCAGTCTGA TCAAACTGAA TTCGCGGGCG TTCCTGGAAA CCCCGGTGAA CCAGACGCCG
CACATCAAGC TGGATTGGCT GAACGGCGAG GCCGAGGATC TGATCGCGCT GAGCGGCGGC
CCGGAGGGGC CGATCTCGCT GGCCTTCACC GCCGACCAGG CGGGCTTGGC GGAAGCCCGC
TGCGACCGTT TGGCGGCGCT GTTCGGCGAC CGGCTGTATA TCGAATTGCA GCGTCACGGC
GTCGACGCCG AGCGCCGCGC CGAGGCGGCG CTGATCGATC TGGCCTACGC CAAGGGGCTG
CCGCTGGTGG CGACCAACGA GCCGTATTTC GCCACCAATG ACGATTACGA GGCCCATGAC
GCGCTATTGT GCATCGCCGG CGGCCGGCTG GTGGCGGAGA CCGACCGTCC GCAGCTCACC
CCGGATCACC GCTTCAAGAC CCGGGCCGAA ATGGCGGTGC TGTTCGCCGA CCTGCCGGAG
GCGCTGGCCT CCACCGTGGA AATCGCCGAG CGCTGCGCGT TCCGGCCGCG CACCCGCAAG
CCGATTCTGC CGCATTTCAC CCTTGGCGCC GGCACCGGCA GCCATGCCGC GGCTGCCTCC
AGCAACGAAG CCGACGAGGT GCGGGCGCAG GCCGAGCAGG GGCTGATCAA GCGGCTGCAG
GTGCATGGCG TGGCGAAAGG CGCCACCGAG GAGGAGTACC GCGCGCGGCT GGAATTCGAA
CTCGGCATCA TCACCCGGAT GCAATATGCC GGCTACTTTC TGATCGTCGG CGACTTCATC
AAATGGGCCA AGGAAAACGG CATTCCGGTC GGTCCGGGCC GCGGCTCCGG CGCAGGCTCG
CTGGTGGCCT ATGCGCTCAC CATCACCGAC CTCGATCCGA TCCGCTTCGG TCTGCTGTTC
GAGCGCTTCC TCAATCCCGA GCGCGTGTCG ATGCCCGACT TCGACATCGA CTTCTGCCAG
GACCGCCGCG GCGAAGTGAT CGAATATGTG CAGCGCCGCT ACGGCCGCGA TCAGGTGGCG
CAGATCATCA CCTTCGGCAC GCTGCAGGCG CGCGGCGTGC TGCGCGACGT CGGCCGGGTG
CTGCAGATGC CCTACGGCCA GGTCGACAAG CTGACCAAGC TGGTGCCGCA AAATCCGGCG
GCGCCGGTGA CGCTGAAGCA GGCGATCGAA AGCGAGCCGA AGCTGCAGGC GTTCCGCGAC
GAAGACCCGG TGGTGGCGCG CGCCTTCAAC ATCGCGCAGC GGCTCGAGGG CTTGACCCGC
CACGCCTCGA CCCACGCCGC CGGCATCGTG ATCGGCGACC GCCCGCTCTC CGAGCTGGTG
CCGATGTATC GCGATCCGAA ATCCGACATG CCGGTCACCC AGTTCAACAT GAAATGGGTG
GAGCCGGCGG GGTTGGTCAA GTTCGACTTC CTCGGCCTGA AGACGCTGAC CACGCTCGAC
GTCGCGGTGA AGCTGTTGAA GCAGCGCGGC GTCGTGGTGT CGCTGCCGAC GGTGCCGCTC
GACGATCCCG ACACCTTCGC GATGCTCGGG CGCGGCGACG TGGTCGGCGT GTTCCAGCTG
GAAAGTCAGG GCATGCGGCG CGCGCTGATC GACATGCGGC CCGACCGCTT CGAGGACATC
ATTGCCCTCG TGGCGCTGTA TCGGCCGGGC CCGATGGCCA ACATCCCGAC CTATTGCGCC
CGCAAGCACG GCGACGAGGA GCCGGAATAT CTGCACCCGA TTCTGGAGTC GATCCTGAAG
GAGACCTTCG GCGTCATCAT CTATCAGGAA CAGGTGATGC AGATCGCCCA GGTGATGGCC
GGCTACTCGC TCGGCCAAGC CGACCTGTTG CGCCGCGCGA TGGGCAAGAA GATCCGCGCC
GAGATGGAGA AGCAGCGCGC CGGCTTCATC GCCGGGTCGG TCGAGCACGG CGTGCCCAAG
GCGCAGGCCG ACGCCATCTT CGAACTGCTC GCGAAGTTCG CCGACTACGG CTTCAACAAG
AGCCACGCCG CGGCCTACGC GCTGGTGTCG TACCACACCG CCTATATGAA GGCGCATTAC
CCGGTGGAGT TTCTGGCGGC GTCGATGACG CTGGAAATCC ACAACACCGA CAAGCTGTCG
GAATTCCGCG CCGAGGCGCA GCGGCTCGGC ATCAAGCTCG AGGCGCCGAG CGTCAACCGC
TCCGGCGCCA CCTTCGAGGT CGCCGACGGC GTGATCTACT ACGCGCTCGC CGCGCTGAAA
GGCGTCGGGG CGCAGGCGGT CGAGCTGATC GTCGAGGGAC GCAAGGGCGG TCTGTTCAGC
TCGCTGGCGG ACTTCGCCGC CAAGGTGAGC CCGAAGGCGA TCAACAAGCG GGTGATCGAG
AGTCTCGCCG CCGCCGGCGC GTTCGACGGG CTCAATCCGA ACCGCGCCGC GGTGTTCGGC
GGCGCCGACG CCATCATGGC GGCCTGCCAA CGCCACCATG AGGCGGCGGC GATGGGGCAG
AACGACATGT TCGGCGGCAT GGCCGATGCA CCGACGATCA TGCTGCCGCA GCTCGAGGCC
TGGCTGCCGG CGGAGCGGCT GCGCCGCGAA TACGACGCCA TCGGCTTCTT CCTGTCCGGG
CATCCGCTCG ACGACTACGC CACCGCGCTG AAGCGGCTGC GGGTGCAGTC CTGGGCCGAG
TTCTGCCGCG CGGTGAAGTC TGGCGCCACC GCCGGCAAGG TCGCCGCCAC CGTGGTGTCG
CGGATGGAGC GGCGCACCAA GACCGGCAAC AAGATGGGCA TCCTCGGGCT GTCGGATCCC
ACCGGGCATT TCGAGGCGGT GCTGTTCTCC GAAGGCCTCG CGCAATATCG CGAGGTGCTG
GAGCCCGGCG GCGCGGTCTT GCTGCAGCTC GGCGCCGAAC TGCAGGGCGA GGACGTCCGC
GCCCGCATCC TGCACGCCGA ACCGCTCGAT GACGCCGCCG CCAAGACCCA GAAGGGGCTG
CGGATCTTCC TGCGCGACAC CAAGCCGCTG GAGTCCATCG CCAAACGGCT GCAGATGCCG
GAGGCGGGTG GCGGCGGATC GGCGACGCCG GCCAGCGAAC CGAAGCGGCC GGGCGGCGAC
GGCGAGGTGA CGCTGGTGAT GATGCTGGAC CTCGAGACCG AGGTGGAAAT GAAGCTGCCC
GGCCGGTTCC GGGTGTCGCC GCAGATCGCC GGCGCGATCA AGGCGGTGCA GGGCGTGGTC
GACGTGCAGA CCGTGTAG
|
|---|
| Protein sequence | MWRPRSPPSS VPWIDTAPMT NAGFVHLHVH SAYSLLRGSI KVAKLCELAK ADHQPALALT
DTDNMFGALE FSEKMAGYGI QPIVGCELAV DFGDQDPNAR NALSAAPSRI VLLAARERGY
RSLIKLNSRA FLETPVNQTP HIKLDWLNGE AEDLIALSGG PEGPISLAFT ADQAGLAEAR
CDRLAALFGD RLYIELQRHG VDAERRAEAA LIDLAYAKGL PLVATNEPYF ATNDDYEAHD
ALLCIAGGRL VAETDRPQLT PDHRFKTRAE MAVLFADLPE ALASTVEIAE RCAFRPRTRK
PILPHFTLGA GTGSHAAAAS SNEADEVRAQ AEQGLIKRLQ VHGVAKGATE EEYRARLEFE
LGIITRMQYA GYFLIVGDFI KWAKENGIPV GPGRGSGAGS LVAYALTITD LDPIRFGLLF
ERFLNPERVS MPDFDIDFCQ DRRGEVIEYV QRRYGRDQVA QIITFGTLQA RGVLRDVGRV
LQMPYGQVDK LTKLVPQNPA APVTLKQAIE SEPKLQAFRD EDPVVARAFN IAQRLEGLTR
HASTHAAGIV IGDRPLSELV PMYRDPKSDM PVTQFNMKWV EPAGLVKFDF LGLKTLTTLD
VAVKLLKQRG VVVSLPTVPL DDPDTFAMLG RGDVVGVFQL ESQGMRRALI DMRPDRFEDI
IALVALYRPG PMANIPTYCA RKHGDEEPEY LHPILESILK ETFGVIIYQE QVMQIAQVMA
GYSLGQADLL RRAMGKKIRA EMEKQRAGFI AGSVEHGVPK AQADAIFELL AKFADYGFNK
SHAAAYALVS YHTAYMKAHY PVEFLAASMT LEIHNTDKLS EFRAEAQRLG IKLEAPSVNR
SGATFEVADG VIYYALAALK GVGAQAVELI VEGRKGGLFS SLADFAAKVS PKAINKRVIE
SLAAAGAFDG LNPNRAAVFG GADAIMAACQ RHHEAAAMGQ NDMFGGMADA PTIMLPQLEA
WLPAERLRRE YDAIGFFLSG HPLDDYATAL KRLRVQSWAE FCRAVKSGAT AGKVAATVVS
RMERRTKTGN KMGILGLSDP TGHFEAVLFS EGLAQYREVL EPGGAVLLQL GAELQGEDVR
ARILHAEPLD DAAAKTQKGL RIFLRDTKPL ESIAKRLQMP EAGGGGSATP ASEPKRPGGD
GEVTLVMMLD LETEVEMKLP GRFRVSPQIA GAIKAVQGVV DVQTV
|
|---|
| |