Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2429 |
Symbol | |
ID | 3971417 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 2630711 |
End bp | 2631409 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637925537 |
Product | ABC transporter related |
Protein accession | YP_532299 |
Protein GI | 90423929 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.506044 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0627468 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAGGAGG TCGCTGAAGA AGTCCCGGTC GTCTATCTGC ACGACGTCAA GCGGCAGTAC GTTCAGGGCG AGTCGATCCT GACCATCCTC AACGGCGCCA AGCTGGCGCT GTGGGCTGGC CAGTCGGTGG CACTGGTGGC GCCGTCGGGC GCCGGCAAAT CGACGCTGCT GCACATCGCA GGCCTGCTCG AGCATCCGGA CGAAGGCGAG GTCTATGTCG GCGGCACCGC CACTTCGGGC TTGAGCGATG CCGAGCGGAC CCAGATCCGT CGCACCGATA TCGGCTTCGT CTACCAGTCG CATCGGCTGC TGCCGGAATT CTCCGCGCTG GAGAACGTCA TGCTGCCGCA GATGATCCGC GGCTTGAAGC GATCCGAGAC CACCGAGCGG GCCAAGGAAA TCCTTGCCTA TCTCGGGCTC GGCGACCGCA TCACCCATCG TCCGGCGGAA CTGTCCGGCG GTGAGCAGCA GCGGGTGGCG ATCGCGCGTG CGGTGGCCAA TGCGCCCCGG GTGCTGCTCG CCGACGAGCC GACCGGCAAT CTCGATGTCC ACACCGCCGA CCATGTATTT CAGGCGCTGA TGCAGCTGGT CCGCGCCACC CAGGTGGCGA TGCTGATCGC CACCCACAAT ATGGAATTGG CCGGCCGGAT GGACCGCCGG GTCTCGATCC AGGACGGCCT CGTGGTCGAG CTCGATTAA
|
Protein sequence | MEEVAEEVPV VYLHDVKRQY VQGESILTIL NGAKLALWAG QSVALVAPSG AGKSTLLHIA GLLEHPDEGE VYVGGTATSG LSDAERTQIR RTDIGFVYQS HRLLPEFSAL ENVMLPQMIR GLKRSETTER AKEILAYLGL GDRITHRPAE LSGGEQQRVA IARAVANAPR VLLADEPTGN LDVHTADHVF QALMQLVRAT QVAMLIATHN MELAGRMDRR VSIQDGLVVE LD
|
| |