| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2416 |
|---|
| Symbol | |
|---|
| ID | 3971500 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 2617686 |
|---|
| End bp | 2619206 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637925525 |
|---|
| Product | NADH dehydrogenase subunit M |
|---|
| Protein accession | YP_532287 |
|---|
| Protein GI | 90423917 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1008] NADH:ubiquinone oxidoreductase subunit 4 (chain M) |
|---|
| TIGRFAM ID | [TIGR01972] proton-translocating NADH-quinone oxidoreductase, chain M |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.185861 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00201163 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGCTT CCATCATGAC CTGGCCCATT CTTTCCGTCG TCACCTTCCT GCCGTTGGTC
GGCGCGCTGC TGCTGTTGGT GATCCGCGGC TCCGATCCGG CGGCGCAGCG CAACGCGCGC
TGGATCGCGC TGTGGACCAC GCTGATCACC TTCGCGGTGT CGCTGATCCT GGTGGCGCGG
TTCGATTCCA GCGTGGCGGA TTTCCAGTTC GTCGAAAAGG CGCCCTGGCT CGCCGCCGGC
ATCGGCTATC ATATGGGGGT CGACGGCATT TCGCTGCCGT TCGTGATCCT GACCACGGCG
CTGATGCCGT TCTGCATCAT CGCCAGCTGG AAATCGATCA CCCGCCGCGT CGGCGAATAC
ATGATGGCGT TCCTGGTGCT GGAAACGCTG ATGATCGGCA CCTTCTCGGC GCTCGATTTG
GTGCTGTTCT ATCTGTTCTT CGAAGGCGGC CTGATCCCGA TGTTCCTGAT CATCGGGGTG
TGGGGCGGCC CGCGCCGGGT CTACGCCTCG TTCAAGTTCT TCCTCTACAC GCTGCTCGGC
TCGGTGTTGA TGCTGCTGGC GATCATGGCG CTGTATCTCA ACGCCGGCAC CACCGACATT
CCGACGCTGA TGCACACCGC GGTGCCGCGC AGCCTGCAGA CCTGGGCCTG GCTCGCCTTC
TTCGCCTCAT TCGCGGTGAA GATGCCGATG TGGCCGGTGC ACACCTGGTT GCCCGACGCC
CACGTCGAGG CGCCGACCGC GGGCTCGGTG GTGTTGGCCG CGATCATGCT GAAGATGGGC
GGCTACGGCT TCCTGCGGTT CTCGCTGCCG ATGTTCCCCG ACGCCTCGCA CGACTTCGCG
CCGCTGATCT TCGCGCTGTC GGTGATCGCC ATCGTCTACA CCTCGCTGGT GGCGCTGATG
CAGGAAGACA TCAAGAAGCT GATCGCCTAC TCCTCGGTGG CGCATATGGG CTTCGTCACC
ATGGGGATCT TCGCCGGCAC CACCCAGGGC GTCGCCGGCG GCGTATTCCA GATGGTGTCG
CACGGCATCG TCTCCGGTGC GCTGTTCCTC TGCGTCGGCA TCGTCTACGA CCGCATGCAC
ACCCGCGAGA TTTCGGCCTA TGGCGGCCTC GTGAACCGGA TGCCGATCTA TGCCGTGGTG
TTCATGGTGT TCACCATGGC CAATGTGGGT CTGCCTGGCA CCTCGGGCTT CGTCGGCGAA
TTCCTGACGC TGCTCGGCAC CTTCAAGGTC AACATCCCGA CCGCGACCGT CGCCACGCTC
GGCGTGATCT TGTCTGCGGC CTATGCGCTG TGGCTGTACC GCAAGGTGGT GTTCGGCGCG
CTGGTCAAGC CGTCGCTCGC CTCGATCAAG GATCTCACCT GGCGCGAGAG CCTGACGCTG
GTGCCGCTGC TCATCCTCAC GCTGCTGTTC GGAGTCTATC CGAAGCCGGT GCTCGACATG
TCGGCCGCCT CGGTGCAGCA CCTCGTCACC ACTTACGCCG CCGCAGCCTC TGCCGTGAAG
GCAGCTGCGC TCGTGCCATG A
|
|---|
| Protein sequence | MSASIMTWPI LSVVTFLPLV GALLLLVIRG SDPAAQRNAR WIALWTTLIT FAVSLILVAR
FDSSVADFQF VEKAPWLAAG IGYHMGVDGI SLPFVILTTA LMPFCIIASW KSITRRVGEY
MMAFLVLETL MIGTFSALDL VLFYLFFEGG LIPMFLIIGV WGGPRRVYAS FKFFLYTLLG
SVLMLLAIMA LYLNAGTTDI PTLMHTAVPR SLQTWAWLAF FASFAVKMPM WPVHTWLPDA
HVEAPTAGSV VLAAIMLKMG GYGFLRFSLP MFPDASHDFA PLIFALSVIA IVYTSLVALM
QEDIKKLIAY SSVAHMGFVT MGIFAGTTQG VAGGVFQMVS HGIVSGALFL CVGIVYDRMH
TREISAYGGL VNRMPIYAVV FMVFTMANVG LPGTSGFVGE FLTLLGTFKV NIPTATVATL
GVILSAAYAL WLYRKVVFGA LVKPSLASIK DLTWRESLTL VPLLILTLLF GVYPKPVLDM
SAASVQHLVT TYAAAASAVK AAALVP
|
|---|
| |