| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2413 |
|---|
| Symbol | |
|---|
| ID | 3971497 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 2614666 |
|---|
| End bp | 2615304 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637925522 |
|---|
| Product | NADH dehydrogenase subunit J |
|---|
| Protein accession | YP_532284 |
|---|
| Protein GI | 90423914 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0839] NADH:ubiquinone oxidoreductase subunit 6 (chain J) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0506325 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0104009 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTTC CTGATCTGTT CTTCTATCTC TACTCCGGCG TCTGCGTGGC GGCCGCCACC
ATGGTGATCG TGTCGCGCAA CCCGGTGCAC GCGGTGCTGT TCCTGATCCT GGTGTTCGTC
AACGCCGCAG GCCTGTTCAT GCTGATGGGC GCCGAGTTCT TGGCGATGAT CCTGATCATC
GTCTATGTCG GCGCCGTCGC GGTGTTGTTC CTGTTCGTCA TCATGATGCT GGACATCGAC
TTCAAGCAGC TGCGCGAAGG GTTTTTCGAA TATCTGCCGT TCGGCCTCTT GATCGGCGTG
ATCTTCCTCG CCGAATTGCT GCTGTTGGCC GGCGGTTGGG TGATCCATCC GACCCTGACC
AAAGCCATCA CCGCGCCGAT CCCGGACAAT ATCAGCAACA CCGAAGCGCT CGGCATGGTG
CTGTACACCC GCTACATCCA TTACTTCCAG ATCTCGGGCT TGATCCTGCT GGTGGCGATG
ATCGGCGCGA TCGTGCTGAC GATGCGGCAC CGGGTCAGCG TCAAGCGGCA GAACATTTCC
GCTCAGAACG CGCGCAACCC GGAGACCGCG ATGGACGTGC GCAAGGTGGC GTCGGGGCAG
GGGCTGCAGG ACGCGGACGC GGCGGAGTGG GTGCAATGA
|
|---|
| Protein sequence | MTLPDLFFYL YSGVCVAAAT MVIVSRNPVH AVLFLILVFV NAAGLFMLMG AEFLAMILII
VYVGAVAVLF LFVIMMLDID FKQLREGFFE YLPFGLLIGV IFLAELLLLA GGWVIHPTLT
KAITAPIPDN ISNTEALGMV LYTRYIHYFQ ISGLILLVAM IGAIVLTMRH RVSVKRQNIS
AQNARNPETA MDVRKVASGQ GLQDADAAEW VQ
|
|---|
| |