| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2404 |
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| Symbol | |
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| ID | 3971488 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 2606317 |
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| End bp | 2607507 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637925513 |
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| Product | NADH dehydrogenase subunit D |
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| Protein accession | YP_532275 |
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| Protein GI | 90423905 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7 |
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| TIGRFAM ID | [TIGR01962] NADH dehydrogenase I, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00163945 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCCTGAAG GCGCGCTTCG CAACTTCACC ATCAATTTCG GACCGCAGCA TCCGGCGGCG
CATGGCGTGC TGCGGCTGGT GCTGGAGCTC GACGGCGAGA TCGTCGAGCG GGTCGATCCG
CATATCGGGC TGTTGCATCG CGGCACCGAG AAGCTGATCG AGGCCAAGAC CTATCTGCAG
GCGATCCCGT ATTTCGATCG GCTCGATTAC GTCGCGCCGA TGAATCAGGA GCACGCCTTC
TGCCTCGCCG CCGAGAAGCT GTTGGACATC GCGGTGCCGC GCCGCGCCCA ATTGATCCGG
GTGCTGTATT GCGAGATCGG CCGCATCCTG TCGCATCTGC TCAACGTCAC CACGCAGGCG
ATGGACGTCG GCGCGCTGAC CCCGCCGCTG TGGGGCTTTG AAGAGCGCGA AAAGCTGATG
ATGTTTTACG AGCGCGCCTC CGGCAGCCGG ATGCACGCGG CGTATTTCCG CGTCGGCGGC
GTGCACCAGG ACCTGCCGCC GAAGCTGGTC GACGACATCG AGGCGTGGTG CGTCGCGTTT
CCGCAAGTCA TCGACGATCT CGATCGGCTG CTCACCGGCA ACCGGATCTT CAAGCAGCGC
AACGTCGATA TCGGCGTGGT GACGCTGGCG CAGGCCTGGG AGTGGGGCTT TTCCGGCGTC
ATGGTGCGCG GCTCCGGCGC CGCCTGGGAT TTGCGCAAGT CGCAGCCCTA TGAGTGCTAC
GCCGAGCTGG AATTCGACAT TCCGATCGGC AAGAACGGCG ACTGCTACGA CCGTTATTGC
ATCCGCATGG AGGAGATGCG GCAGTCGGTG CGGATCATGC AGCAGTGCAT CGCCAAGCTG
CGCGCGCCGG ACGGCGGCGG CCCGGTCGCG GTCCAGGACA ACAAGATTTT CCCGCCGCGT
CGCGGCGAGA TGAAGCGCTC GATGGAATCG CTGATCCATC ACTTCAAGCT TTATACCGAG
GGCTTCCGCG TGCCCGCCGG CGAAGTCTAC GTCGCGGTCG AGGCGCCGAA AGGCGAATTC
GGCGTGTTCC TGGTCTCCGA CGGTAGCAAC AAACCCTATA AGTGCAAGAT CCGCGCGCCG
GGCTTCGCGC ATCTGCAGGC GATGGACTTT ATCTCGCGCG GCCATCTGTT GGCCGACGTC
TCGGCGATCC TGGGCTCGCT CGACATCGTG TTCGGCGAGG TCGATCGGTG A
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| Protein sequence | MPEGALRNFT INFGPQHPAA HGVLRLVLEL DGEIVERVDP HIGLLHRGTE KLIEAKTYLQ
AIPYFDRLDY VAPMNQEHAF CLAAEKLLDI AVPRRAQLIR VLYCEIGRIL SHLLNVTTQA
MDVGALTPPL WGFEEREKLM MFYERASGSR MHAAYFRVGG VHQDLPPKLV DDIEAWCVAF
PQVIDDLDRL LTGNRIFKQR NVDIGVVTLA QAWEWGFSGV MVRGSGAAWD LRKSQPYECY
AELEFDIPIG KNGDCYDRYC IRMEEMRQSV RIMQQCIAKL RAPDGGGPVA VQDNKIFPPR
RGEMKRSMES LIHHFKLYTE GFRVPAGEVY VAVEAPKGEF GVFLVSDGSN KPYKCKIRAP
GFAHLQAMDF ISRGHLLADV SAILGSLDIV FGEVDR
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