Gene RPC_2393 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_2393 
SymbolclpX 
ID3971530 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp2596778 
End bp2598052 
Gene Length1275 bp 
Protein Length424 aa 
Translation table11 
GC content62% 
IMG OID637925500 
ProductATP-dependent protease ATP-binding subunit ClpX 
Protein accessionYP_532264 
Protein GI90423894 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1219] ATP-dependent protease Clp, ATPase subunit 
TIGRFAM ID[TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0951705 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0942361 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAAGG TCGGCACGAG CGACTCCAAG AACACGCTGT ATTGCTCGTT CTGTGGAAAG 
AGCCAGCACG AAGTCCGCAA GCTGATTGCG GGACCCACCG TATTCATCTG CGACGAATGC
GTTGAGCTGT GCATGGACAT CATCCGCGAG GAGAACAAAT CCTCACTGGT GAAATCGCGC
GACGGAATTC CGACCCCGAA GGAAATCTGC AAGGTTCTCG ACGATTACGT GATCGGCCAG
AGCCATGCCA AGAAGGTTCT CTCGGTCGCG GTGCATAACC ACTACAAGCG CCTCAACCAC
CAGACCAAGC ACAACGACGT CGAATTGGCG AAGTCGAACA TCCTGTTGAT CGGCCCGACC
GGGTCCGGCA AGACGCTGCT CGCGCAGACG CTCGCCCGCA TCCTCGACGT GCCGTTCACG
ATGGCCGATG CGACGACGCT GACCGAAGCC GGCTATGTCG GCGAGGACGT CGAGAACATC
ATCCTGAAGC TGCTGCAGTC GGCCGACTAC AACGTCGAGC GGGCGCAGCG CGGCATCGTC
TACATCGACG AAATCGACAA GATCTCGCGC AAGTCCGACA ACCCCTCGAT CACCCGCGAC
GTCTCGGGCG AGGGCGTGCA GCAGGCCTTG CTGAAGATCA TGGAAGGCAC CGTCGCGTCG
GTGCCGCCGC AGGGCGGCCG CAAGCATCCG CAGCAGGAAT TCCTGCAGGT CGACACCACC
AACATCCTGT TCATCTGCGG CGGCGCGTTC TCGGGTCTCG AGAAGATCAT CTCCGCACGC
GGTCGGTCGA CCTCGATCGG CTTCGCGGCG CAGGTGCTGG CGCCGGAAGA TCGCCGCACC
GGCGAAATCT TCCGCCACGT CGAGCCCGAG GATCTGCTGA AGTACGGCCT GATCCCGGAA
TTCGTCGGTC GTTTGCCGGT GGTGGCGACG CTCGAGGATC TCGACGAGGC TTCGCTGAAG
AAGATCCTCA CCGATCCGAA GAACGCGCTG GTCAAGCAGT ACCAGCGGTT GTTCGAAATG
GAGAACATCG AGCTGACCTT CGCCGACGAG GCGCTTGGCG CGGTGGCCCG CAAGGCGATC
GAGCGCAAGA CCGGCGCGCG CGGCTTGCGC TCCATCCTGG AGAGCATCCT GCTCGAGACC
ATGTTCGATC TTCCGGGCCT GGAAGGCGTC GAAGAGGTGG TGATCTCGCG CGAGGTCGTC
GAAGGTACGG CGCGGCCGCT GTACATCTAC GCCGACCGCT CCGATCGGAC CGCCGAAAGC
AGCGCCAGCG CCTGA
 
Protein sequence
MSKVGTSDSK NTLYCSFCGK SQHEVRKLIA GPTVFICDEC VELCMDIIRE ENKSSLVKSR 
DGIPTPKEIC KVLDDYVIGQ SHAKKVLSVA VHNHYKRLNH QTKHNDVELA KSNILLIGPT
GSGKTLLAQT LARILDVPFT MADATTLTEA GYVGEDVENI ILKLLQSADY NVERAQRGIV
YIDEIDKISR KSDNPSITRD VSGEGVQQAL LKIMEGTVAS VPPQGGRKHP QQEFLQVDTT
NILFICGGAF SGLEKIISAR GRSTSIGFAA QVLAPEDRRT GEIFRHVEPE DLLKYGLIPE
FVGRLPVVAT LEDLDEASLK KILTDPKNAL VKQYQRLFEM ENIELTFADE ALGAVARKAI
ERKTGARGLR SILESILLET MFDLPGLEGV EEVVISREVV EGTARPLYIY ADRSDRTAES
SASA