| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2247 |
|---|
| Symbol | pyrB |
|---|
| ID | 3973264 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 2451544 |
|---|
| End bp | 2452497 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637925355 |
|---|
| Product | aspartate carbamoyltransferase catalytic subunit |
|---|
| Protein accession | YP_532120 |
|---|
| Protein GI | 90423750 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0540] Aspartate carbamoyltransferase, catalytic chain |
|---|
| TIGRFAM ID | [TIGR00670] aspartate carbamoyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.414785 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCTG CACCGAAATC CAGTTTCGTC CTTGCTCACC GGCATCTGCT GGGCATCGAG
GGCCTTTCCG CCGCCGATAT CACCGGCCTG CTCGACCTGT CCGAAGAATA TGTCGAGCTG
AACCGCCAGA TCGACAAAAA GCGCACCAGT CTGCGCGGCC GCACCCAGGT CAATCTGTTC
TTCGAGGCCT CGACCCGGAC GCAGTCCTCG TTCGAGATCG CCGGCAAGCG GCTCGGCGCC
GACGTCATGA ACATGTCGGT GTCGTCGTCC TCGATGCGCA AGGGCGAGAC CCTGATCGAC
ACCGCGGTGA CGCTGAACGC CATGCATCCC GACCTCCTGG TGGTGCGGCA TCACGCCTCC
GGCGCGGTGG AACTGCTGGC GCGCAAGGTT GACGGCTCGG TGGTCAACGC CGGCGACGGC
GCCCACGAAC ATCCGACGCA GGCGCTGCTC GACGCCCTCA CCATCCGCCG CAACAAGGGC
CGGCTGGAAG GCCTCACCAT CGCGATCTGC GGCGACGTGA TGCATTCCCG CGTCGCCCGC
TCCAACATCC TGTTGCTGAA CATCATGGGC GCCCGGGTCC GCGTGGTGGC GCCATCGACG
CTGCTGCCGC CGGGCATCGA GCGGATGGGC GTCGAAGTCG CCCGCGACAT GCGCGAAGGC
CTCAACGGCG CCGACATCGT GATGATGCTG CGGCTGCAGC GCGAGCGCAT GAACGGCTCG
TTCGTGCCCT CCTCGCAGGA ATATTTCCAA TATTTCGGCC TCGACCAGAA GAAGCTCGGC
TATGCCAAGC CGGACGCGCT GGTGATGCAT CCGGGCCCGA TGAACCGCGG CGTCGAAATC
GACTCCATCG TCGCCGACGG CGCGCAATCC CTCATTCGTG AACAGGTCGA GATGGGCGTA
GCGGTCCGCA TGGCCGTACT GGAAGCGCTC GCGCGCAATT TGCCCAATGC GTAG
|
|---|
| Protein sequence | MTPAPKSSFV LAHRHLLGIE GLSAADITGL LDLSEEYVEL NRQIDKKRTS LRGRTQVNLF
FEASTRTQSS FEIAGKRLGA DVMNMSVSSS SMRKGETLID TAVTLNAMHP DLLVVRHHAS
GAVELLARKV DGSVVNAGDG AHEHPTQALL DALTIRRNKG RLEGLTIAIC GDVMHSRVAR
SNILLLNIMG ARVRVVAPST LLPPGIERMG VEVARDMREG LNGADIVMML RLQRERMNGS
FVPSSQEYFQ YFGLDQKKLG YAKPDALVMH PGPMNRGVEI DSIVADGAQS LIREQVEMGV
AVRMAVLEAL ARNLPNA
|
|---|
| |