Gene RPC_2230 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_2230 
Symbol 
ID3973247 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp2432179 
End bp2433321 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content67% 
IMG OID637925338 
Productacyl-CoA dehydrogenase-like 
Protein accessionYP_532103 
Protein GI90423733 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID[TIGR03203] pimeloyl-CoA dehydrogenase, small subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0715641 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.106969 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTTTG ATCTCTCGGA GGAGCAGCGG CTCCTGAAGG ACAGCGTCGA GGGCCTGTTG 
AAGACCTCGT ATGATTTCGA CGCCCGCAAG AAGTATCAGG CCGAGCCCGG CGGCTGGAGC
AAGACGGTGT GGAGCAAGCT CGCCGAGCAG GGCCTCTTGG GCCTGCCGTT TTCCGAAGCC
GACGGCGGCT TCGGCGCGGG CTCCGTGGAA ACCATGATCG TGATGGAAGC GCTCGGCAAG
GCGCTGGTGG TCGAGCCTTA TCTCGCCACC GTGGTGCTCG GCGGCGGCTT CCTGCGCCAC
GGCGGCTCGG CCGAGCAGAA GGCCGCGCAT CTGCCCGGGC TGATCGACGG CTCCAAGACC
TTCGCGTTTG CGCAACTGGA GAAGAATTCG CGCTACGATC TCGGCGACGT CACCACCACC
GCCAAGAAGA CCGGCGCGAT GTGGGTGCTC GACGGCGAGA AATTCGTCGT GCTGCATGGC
GAGACCGCCG ACACCCTGAT CGTCACCGCG CGCAGCAAGG GCGCGCGGCG CGACCGCGAC
GGCATCGGCG TGTTCCTGGT GCCGGCGGGC GCCAAGGGCG TCAGCATCAA GGGCTATCCG
ACCCAGGACG GGCTGCAGGC CGCCGACATC AGCCTGTCCG GCGTGGTGAT CGATGCCGAT
TGCGCGATCG GCGATCCGGA GAACGGCCTG CCGCTGGTCG AGCGGGTGGT CGACGACGCC
CGCGCCGCGC TGTGCGCCGA GGCGGTCGGC GCGATGGATG AATCGCTGAA GTCCACCGTG
GACTACATGA AGACCCGCAC CCAGTTCGGG GTGCCGATCG GCTCGTTCCA GGTGCTGCAG
CATCGCGCCG CCGACATGTT CGTCGCGGTC GAGCAGGCCC GCTCGATGGC GCTGTTCGCC
ACCATGGCGA GCGATTTCGA CGACGCCCGC GAGCGCGCCA ACGCCATCGC CGCAGCCAAG
GTCCAAGTTG GTCAGTCGCT GAAATTCGTC GGCGAACAGG CGATCCAGCT GCACGGCGGC
GTCGGCATGA CCATGGAGTA CAAGATCGGC CACTACTTCA AGCGGCTGAC CATGATCGAG
CACGCGTTCG GCGACAGCGA CTTCCACCTC AGCCGCGTCA GCGCCGCCGG CGGGCTGATC
TAG
 
Protein sequence
MDFDLSEEQR LLKDSVEGLL KTSYDFDARK KYQAEPGGWS KTVWSKLAEQ GLLGLPFSEA 
DGGFGAGSVE TMIVMEALGK ALVVEPYLAT VVLGGGFLRH GGSAEQKAAH LPGLIDGSKT
FAFAQLEKNS RYDLGDVTTT AKKTGAMWVL DGEKFVVLHG ETADTLIVTA RSKGARRDRD
GIGVFLVPAG AKGVSIKGYP TQDGLQAADI SLSGVVIDAD CAIGDPENGL PLVERVVDDA
RAALCAEAVG AMDESLKSTV DYMKTRTQFG VPIGSFQVLQ HRAADMFVAV EQARSMALFA
TMASDFDDAR ERANAIAAAK VQVGQSLKFV GEQAIQLHGG VGMTMEYKIG HYFKRLTMIE
HAFGDSDFHL SRVSAAGGLI