Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2230 |
Symbol | |
ID | 3973247 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 2432179 |
End bp | 2433321 |
Gene Length | 1143 bp |
Protein Length | 380 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637925338 |
Product | acyl-CoA dehydrogenase-like |
Protein accession | YP_532103 |
Protein GI | 90423733 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | [TIGR03203] pimeloyl-CoA dehydrogenase, small subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0715641 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.106969 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATTTTG ATCTCTCGGA GGAGCAGCGG CTCCTGAAGG ACAGCGTCGA GGGCCTGTTG AAGACCTCGT ATGATTTCGA CGCCCGCAAG AAGTATCAGG CCGAGCCCGG CGGCTGGAGC AAGACGGTGT GGAGCAAGCT CGCCGAGCAG GGCCTCTTGG GCCTGCCGTT TTCCGAAGCC GACGGCGGCT TCGGCGCGGG CTCCGTGGAA ACCATGATCG TGATGGAAGC GCTCGGCAAG GCGCTGGTGG TCGAGCCTTA TCTCGCCACC GTGGTGCTCG GCGGCGGCTT CCTGCGCCAC GGCGGCTCGG CCGAGCAGAA GGCCGCGCAT CTGCCCGGGC TGATCGACGG CTCCAAGACC TTCGCGTTTG CGCAACTGGA GAAGAATTCG CGCTACGATC TCGGCGACGT CACCACCACC GCCAAGAAGA CCGGCGCGAT GTGGGTGCTC GACGGCGAGA AATTCGTCGT GCTGCATGGC GAGACCGCCG ACACCCTGAT CGTCACCGCG CGCAGCAAGG GCGCGCGGCG CGACCGCGAC GGCATCGGCG TGTTCCTGGT GCCGGCGGGC GCCAAGGGCG TCAGCATCAA GGGCTATCCG ACCCAGGACG GGCTGCAGGC CGCCGACATC AGCCTGTCCG GCGTGGTGAT CGATGCCGAT TGCGCGATCG GCGATCCGGA GAACGGCCTG CCGCTGGTCG AGCGGGTGGT CGACGACGCC CGCGCCGCGC TGTGCGCCGA GGCGGTCGGC GCGATGGATG AATCGCTGAA GTCCACCGTG GACTACATGA AGACCCGCAC CCAGTTCGGG GTGCCGATCG GCTCGTTCCA GGTGCTGCAG CATCGCGCCG CCGACATGTT CGTCGCGGTC GAGCAGGCCC GCTCGATGGC GCTGTTCGCC ACCATGGCGA GCGATTTCGA CGACGCCCGC GAGCGCGCCA ACGCCATCGC CGCAGCCAAG GTCCAAGTTG GTCAGTCGCT GAAATTCGTC GGCGAACAGG CGATCCAGCT GCACGGCGGC GTCGGCATGA CCATGGAGTA CAAGATCGGC CACTACTTCA AGCGGCTGAC CATGATCGAG CACGCGTTCG GCGACAGCGA CTTCCACCTC AGCCGCGTCA GCGCCGCCGG CGGGCTGATC TAG
|
Protein sequence | MDFDLSEEQR LLKDSVEGLL KTSYDFDARK KYQAEPGGWS KTVWSKLAEQ GLLGLPFSEA DGGFGAGSVE TMIVMEALGK ALVVEPYLAT VVLGGGFLRH GGSAEQKAAH LPGLIDGSKT FAFAQLEKNS RYDLGDVTTT AKKTGAMWVL DGEKFVVLHG ETADTLIVTA RSKGARRDRD GIGVFLVPAG AKGVSIKGYP TQDGLQAADI SLSGVVIDAD CAIGDPENGL PLVERVVDDA RAALCAEAVG AMDESLKSTV DYMKTRTQFG VPIGSFQVLQ HRAADMFVAV EQARSMALFA TMASDFDDAR ERANAIAAAK VQVGQSLKFV GEQAIQLHGG VGMTMEYKIG HYFKRLTMIE HAFGDSDFHL SRVSAAGGLI
|
| |