Gene RPC_2226 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_2226 
Symbol 
ID3973224 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp2425450 
End bp2427543 
Gene Length2094 bp 
Protein Length697 aa 
Translation table11 
GC content68% 
IMG OID637925334 
Product3-hydroxyacyl-CoA dehydrogenase, NAD-binding 
Protein accessionYP_532099 
Protein GI90423729 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0438642 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.712882 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCGACG TCGTCAAGCT GGAACGCCAT GATGCGATCG CCATCGTCAC GGTGGATAGT 
CCGCCGGTCA ACGCGCTGAG CGCGGCGGTG CGTCGCGGCA TCTCCGAAAC CGTCAAGCAG
GCGATCGCCG ATCCCGCGGT GCAGGCGATC GTGCTGACCT GCGCCGGCCG CACCTTCATC
GCCGGCGCCG ACATCACCGA ATTCGGCAAG CCGCCGCAGT CGCCGGGCCT CGGCGAAGTC
ATCACCGAGT TGGAGAATTC GCCGAAACCG ATCGTCGCGG CGATCCACGG CACCGCGCTC
GGCGGCGGGC TCGAAGTGGC GCTCGGCTGC CATTTCCGCG TCGCGGTAAA AGACGCCAGG
CTCGGTCTGC CGGAGGTGAA GCTTGGACTG TTACCAGGGG CGGGCGGCAC GCAGCGGCTG
CCGCGCGCGG TCGGCCCGGA GTTGGCCGTG AAGATGATCG TCGGCGGCGA TCCGATCGGC
GCCGCCGAGG CGCTGCAGCA CGGCCTGATC GATGAAATCG TCGAGGCGAC CGCTGCCGGC
GGCGAGGCCT TCGCGCGCAA GGTGCTGGCG GAGCAACGCG GCCTGCGCAG ACTGCGCGAC
GACGACTCCA AATTGCAGGC GGCGAAGACC GACCGCTCGA TCTTCACGCA AGCCGTGGCT
TCGATGACCA AGAAGGCGAG GGGGCTGGAA GCGCCGTTCG CCGCCGCCGA CGCGGTCGGC
GCCGCGATCG ATCTGCCGTT CGACGAGGGG CTGAAGCAGG AGCGCGACGG CTTCATGAAG
CTGGTCACCG GCGAGCAGTC GAAGGCGCAG CGCTACGCGT TCTTCGCCGA GCGCGAGGCC
GCCAAGGTCT CCGTGCCGGA CGGCACCAAG CCGCGGCCGG TGGCGCGCGT CGCCATCATC
GGCGCCGGCA CCATGGGCGG CGGCATCGCG ATGTCGTTCG CCAACGCCGG AATTCCGGTG
ACGCTGATCG AGACCGGCGA GCAGCAATTG AAACGCGGCC TCGGCGTGAT GCAGAAGAAC
TACGACGCCA CCGCCGCGCG GGGAGGAATC CCCGCCGACG CGCCGGCCAA GCGGATGGCG
CTGATCAACG GCGTGGTCGG TCTGGAGCAC GTCAAGGACG CCGATCTGGT CATCGAAGCG
GTGTTCGAAA CCATGGCGGT GAAGAAAGAA GTCTTCACCG CGATCGACGC CTACGCCAAG
CCCGGCGCGG TGTTGGCGTC GAACACGTCT TATCTCAACA TCGACGAGAT CGCCCAGGTC
ACCAAGCGGC CGGAGGACGT GCTCGGCATG CACTTCTTCT CGCCGGCCAA TGTGATGAAG
CTGTGCGAGA TCGTCCGCGC CGACAAGACC GCGCCGGACG CGCTGCTGAC GGCTGTGGCG
ATCGCGCGAA AAATCGCCAA GGTGCCGGCG GTGGTGGGCG TCTGCGACGG CTTCGTCGGC
AACCGCATGC TGGCGGCGCG CGGCAAGCAG GCGGAAAGAC TGTTGTTCGA AGGCGCGCTG
CCGCAGCAGG TCGACGCCGT GGTGACCAAG TTCGGCATGC CGATGGGGCC GTTCGCGATG
GGCGATCTCG CCGGCCTCGA TATCGGCTGG CGCTCGCGGA AGGATCGCGG CATCAAATCG
GAAATCGCCG ACGCATTGTG CGAGGCCGGC CGGTTCGGCC AGAAGACCGG CAAGGGCTAC
TACAAGTACG AGGCGGGCTC GCGCGCGCCA TTGCCCGATC CGGAGGTCGA GGCGCTGATC
AACGACACGC TGAGCAAGCT CGGGCTGAAG CGCCGCGAGG TCTCCGACGA GGAGATCCTC
GAGCGGATGA TGTATCCGAT GATCAACGAG GGGGCGCGGA TTCTCGAAGA GGGCATCGCG
GCGCGTCCCT CCGACATCGA CGTGATCTGG CTGTACGGCT ACGGCTGGCC GATCTATCGC
GGCGGACCGA TGTACTATGC CGACCAGGTC GGCTTGAAGC ACGTCGCCGA GCGGCTGAGC
TACTACGCCA AGGCGACCAA CGATCCCACG CTTGAGCCGG CGCCGCTGCT GGCGCGGCTC
GCCGCCGAGG GCGGCTCATT CGCCACGCTG ACGCAGCGGG CGAAAGCCGC GTGA
 
Protein sequence
MTDVVKLERH DAIAIVTVDS PPVNALSAAV RRGISETVKQ AIADPAVQAI VLTCAGRTFI 
AGADITEFGK PPQSPGLGEV ITELENSPKP IVAAIHGTAL GGGLEVALGC HFRVAVKDAR
LGLPEVKLGL LPGAGGTQRL PRAVGPELAV KMIVGGDPIG AAEALQHGLI DEIVEATAAG
GEAFARKVLA EQRGLRRLRD DDSKLQAAKT DRSIFTQAVA SMTKKARGLE APFAAADAVG
AAIDLPFDEG LKQERDGFMK LVTGEQSKAQ RYAFFAEREA AKVSVPDGTK PRPVARVAII
GAGTMGGGIA MSFANAGIPV TLIETGEQQL KRGLGVMQKN YDATAARGGI PADAPAKRMA
LINGVVGLEH VKDADLVIEA VFETMAVKKE VFTAIDAYAK PGAVLASNTS YLNIDEIAQV
TKRPEDVLGM HFFSPANVMK LCEIVRADKT APDALLTAVA IARKIAKVPA VVGVCDGFVG
NRMLAARGKQ AERLLFEGAL PQQVDAVVTK FGMPMGPFAM GDLAGLDIGW RSRKDRGIKS
EIADALCEAG RFGQKTGKGY YKYEAGSRAP LPDPEVEALI NDTLSKLGLK RREVSDEEIL
ERMMYPMINE GARILEEGIA ARPSDIDVIW LYGYGWPIYR GGPMYYADQV GLKHVAERLS
YYAKATNDPT LEPAPLLARL AAEGGSFATL TQRAKAA