| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2196 |
|---|
| Symbol | |
|---|
| ID | 3972755 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 2396116 |
|---|
| End bp | 2396874 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637925304 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_532069 |
|---|
| Protein GI | 90423699 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTGA AAGACGTCTC CGTCCTGATC ACCGGCGGCG GCTCTGGACT GGGGGCCGCG
ACCGCGCGGG CGATGGCCGC CAAGGGCGCC AAGGTCGCGG TGCTCGACAT GAACAAGGAC
AATGCCGAGA AGGTCGCCGC CGAGATCGGC GGCACGGCTT GCGTCGGCGA CGTCTCCGAA
GAAGCCCAGG TGCAGGAAGC GATCGCCAAG GCCGAAGCCG CCCATGGCGT GATCCGGGTG
CTGGTGAATT GCGCCGGCAT CGGCAACGCG GCAAAGACCG TCGGCAAGAA CGGCGCGCTG
CCGCTCGATC AGTTCTCCCG CGTCATCAAG GTCAATCTGA TCGGCTCGTT CAATTGCATT
CGCCTGGTCG CCGAGCGGAT GCAGAGCGCG CCGCCGATCG GCGAGGAGCG CGGCGTCGTC
ATCAGCACCG CGAGCGTGGC GGCGTTCGAC GGCCAGATCG GGCAGGCGGC GTATTCCGCC
TCCAAGGGCG GCATCGTCGG CATGACGCTG CCGGTGGCGC GCGATCTTGC CTCCTTGAAC
ATCCGCGTCA TGACGATCGC GCCCGGCCTG TTCCTGACGC CGCTGCTGCA GGGATTGCCG
GAGGAGGCGC AGAAGAGCCT CGGCGCCCAG GTGCCGCATC CGGCGCGGCT CGGCGATCCT
AGCGAATATG CCATGCTGGC CGTCCACATC GTCGAGAACC CGATGCTGAA CGGCGAGACC
ATCCGGCTCG ACGGCGCGAT CCGCATGGCG CCGCGCTAG
|
|---|
| Protein sequence | MQLKDVSVLI TGGGSGLGAA TARAMAAKGA KVAVLDMNKD NAEKVAAEIG GTACVGDVSE
EAQVQEAIAK AEAAHGVIRV LVNCAGIGNA AKTVGKNGAL PLDQFSRVIK VNLIGSFNCI
RLVAERMQSA PPIGEERGVV ISTASVAAFD GQIGQAAYSA SKGGIVGMTL PVARDLASLN
IRVMTIAPGL FLTPLLQGLP EEAQKSLGAQ VPHPARLGDP SEYAMLAVHI VENPMLNGET
IRLDGAIRMA PR
|
|---|
| |