| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2193 |
|---|
| Symbol | |
|---|
| ID | 3972752 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 2391504 |
|---|
| End bp | 2393045 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637925301 |
|---|
| Product | long-chain-fatty-acid--CoA ligase |
|---|
| Protein accession | YP_532066 |
|---|
| Protein GI | 90423696 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCATC CGTCGATCCA CGCCAAGACC CAGCCCGACA AGATCGCCTA CCAGATGGCC
GGCTCGGGCC AATCGATCAC TTATCGCCAG CTGGACGAAC GCTCCAACCA GGGCGCGCAG
CTGTTTCGCG CGCTCGGCTT GCCAGCCGGC GGTCATATCG CGCTGCTGTT GGAGAACAGG
CTCGAATTCA TGGAAATCTG CTGGGCGGCG CAGCGCTGCG GGCTGTACTA CACCGCGATC
AGCCGCTACC TCACCGAGGA CGAAATCCGC TACATCGTCA AAGACTGCGG CGCCCGCGTC
GTGATCGCCT CGGCGAAGGG CGCCGACACG CTCGCGCCCT TGATCGCCGA GATGCCGGAG
GTCGCCTTCT TCAGCGTCGA TGCCGCGCCG CCGGGGTTCC GCTCCTGGCA CGAGGCGCGG
GCCGCGCAGC CCACCACGCC GATCGCCGAC GAGGTGGCAG GCAGCGACAT GCTGTATTCG
TCGGGCACCA CCGGGCGGCC GAAGGGCATC AAGCGCGCCT TCGACAACAA TCCGATCGAG
CTACCCAACC CGTTCCTGAG AATTCTCTGC GCCGGGATGT GCGGCATGGG CGCCGACAGC
ATCTATCTGT CGCCGGCGCC CTTGTATCAC GCCGCTCCGT TGCGCTTCAA CATGATGGCG
ATCACGCTCG GCGGCACTTC GATCATCATG GAGAATTTCG ACCCCGAGGA GTTCTTGGCG
CTGGTGGAGA CGCACAAGAT CACCCAGTCG CAGCTGGTGC CGACGATGTT CGTGCGGATG
CTGAAGCTGC CCGACGAGGT CCGTACGCGC TACGACGTCG CCTCGCTGAA AGGCGCGATC
CACGCCGCGG CGCCCTGCCC GATCGACGTC AAGGCGAAGA TGATCGACTG GTGGGGGCCG
ATCCTGATCG AGTATTACGC GGGCTCCGAG GGCAACGGCG TCACGGTGTC GAACTCGCAG
CAATGGCTCG GCCATCGCGG CACCGTCGGC CGTCCGGTGG TCGGCCAAAT CAAGATTTTG
GACGACAACG ACGAGGAATT GCCGGCGGGC GAGATCGGCA CGGTATATTT CGCCGGCGGA
CCTTCGTTCA GCTATCACAA CGATCCGGAG AAGACGAGCC GCGCCTTCAA CGCCCGCGGC
TGGTCGACGC TCGGCGACGT CGGCTATCTC GACGCCGAGG GCTTTCTCTA TCTCACCGAC
CGCAAGAGCT ACATGATCAT CTCCGGCGGC GTGAACGTCT ATCCGCAGGA GACCGAAGAC
GTGCTGCTGA CCCATCCCGA GATCGCCGAC GTCGCGGTGT TCGGCGTGCC CAACGAGGAG
ATGGGCGAAG AGGTCAAGGC GGTGGTGCAG CCGCGCGACA TGGCGCTGGC GGGGCCGGCC
TTCGCGGCCG AGCTGATCGC GTTCTGCCGG CAGAAACTGT CGCCGATCAA ATGCCCGAAG
AGCATCGACT TCGAAGCCGA ACTGCCGCGC ACCCCGACCG GCAAGCTGGT GAAGCGGCAC
CTCAAAGACC GCTACTGGCC GAAGCAGAGC GCGGCGGCAT GA
|
|---|
| Protein sequence | MSHPSIHAKT QPDKIAYQMA GSGQSITYRQ LDERSNQGAQ LFRALGLPAG GHIALLLENR
LEFMEICWAA QRCGLYYTAI SRYLTEDEIR YIVKDCGARV VIASAKGADT LAPLIAEMPE
VAFFSVDAAP PGFRSWHEAR AAQPTTPIAD EVAGSDMLYS SGTTGRPKGI KRAFDNNPIE
LPNPFLRILC AGMCGMGADS IYLSPAPLYH AAPLRFNMMA ITLGGTSIIM ENFDPEEFLA
LVETHKITQS QLVPTMFVRM LKLPDEVRTR YDVASLKGAI HAAAPCPIDV KAKMIDWWGP
ILIEYYAGSE GNGVTVSNSQ QWLGHRGTVG RPVVGQIKIL DDNDEELPAG EIGTVYFAGG
PSFSYHNDPE KTSRAFNARG WSTLGDVGYL DAEGFLYLTD RKSYMIISGG VNVYPQETED
VLLTHPEIAD VAVFGVPNEE MGEEVKAVVQ PRDMALAGPA FAAELIAFCR QKLSPIKCPK
SIDFEAELPR TPTGKLVKRH LKDRYWPKQS AAA
|
|---|
| |