| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2163 |
|---|
| Symbol | |
|---|
| ID | 3971984 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 2356505 |
|---|
| End bp | 2357113 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637925271 |
|---|
| Product | thiamine-phosphate pyrophosphorylase |
|---|
| Protein accession | YP_532036 |
|---|
| Protein GI | 90423666 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0352] Thiamine monophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00693] thiamine-phosphate pyrophosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.507656 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.244933 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGTATC CTGATCGCTT CTATCCGGTG GTCGACAGCC TCGCCTGGGT GGCGCGGCTG
ACCGCGCAGG GCGTCGGCAC GCTGCAGCTG CGGGTCAAGG AGCTCGACGA CGCGCAATCG
CTGCAGCTGG TCACCGACGC GCTGGCGCTG GTGAAAAACA CCACGACCCG GCTGGTGATC
AACGATTACT GGCGCGCCGC GATCGTCGCC GGCGCGCAGC ATCTGCATCT CGGCCAGGAA
GACCTCGCCG ACGCCGACCT TGGCGAAATC CGCAAGGCCG GGCTGACGCT CGGGCTCTCG
ACCCATGACG ACGCCGAACT CGAAACCGCG CTTAAGGCAG AGCCGGACTA CATCGCGCTC
GGGCCGATCT TTCCGACCAC GCTGAAGTCG ATGCGCTTTG CGCCGCAGGG CGTGCCGAAG
CTCCGCGACT GGAAAAAGCG CGTCGGCAAC ATTCCGCTGG TGGCGATCGG CGGCATCAAG
CTGGAACAGG CCGACGAGAT TTTTGCAGCC GGCGCGGACT CCATCGCCGT GGTCAGCGAC
GTGACGCAAA ACCCCGACCC CGACGCAAGG GTGCGGGCCT GGCTGGATTA TGTCGCGGCG
GCGGGATGA
|
|---|
| Protein sequence | MPYPDRFYPV VDSLAWVARL TAQGVGTLQL RVKELDDAQS LQLVTDALAL VKNTTTRLVI
NDYWRAAIVA GAQHLHLGQE DLADADLGEI RKAGLTLGLS THDDAELETA LKAEPDYIAL
GPIFPTTLKS MRFAPQGVPK LRDWKKRVGN IPLVAIGGIK LEQADEIFAA GADSIAVVSD
VTQNPDPDAR VRAWLDYVAA AG
|
|---|
| |