| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2156 |
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| Symbol | |
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| ID | 3971977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 2348957 |
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| End bp | 2350369 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637925264 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_532029 |
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| Protein GI | 90423659 |
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| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG2703] Hemerythrin
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR02481] hemerythrin-like metal-binding domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.117189 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCCCGT TTCAATGGAA TGCGCTGTTC GAAACCGGCA ATGCCCGGAT CGATCGCCAG
CATCGCACGC TGTTCGAACT CACCAACGAT CTCGCCCGCG CCGTGCAGAA CGGCGAGAAA
CTTCCGGAAA TCTCCGCGCT CGTCCTCAAG CTGCGTGACT ACGCCGCGAC GCATTTCTGC
GACGAGGAGC AACTGATGCG CTGCTCGGCG CTGGCGATCC AGGAAAAGAC CCGCCACGCC
TGCGCGCATC GCTCGTTCAT CAAGAAGGTC GAAGATCTCG CGGCGCGCCG CGACCTGTCG
AATGTGGAAG CGGTCAGCGA ATTTCTGCAG TTTCTGGTCA CCTGGCTGGT GACCCATATT
CTCAAGCTCG ATCATCGGAT GACCAAGGCG CTGTTGCGGC AGCCCGCGCT CGACGCCGAC
AAGCGGATCA CCGTCGAACA GGTTCTGATC TCCGCCTTGA TGGAGACCGA GCGGCGGTTT
CGGGTGATCT CCGACGAAGC GCCGACGCTG ATCTGGATCT GCGGCATCGA CGGCGTGCGC
GACTTCGCCA ACAAAGCGTG GTTCGACCTC GTCGGCGCGA CGCCGAGCGC GGATGCGCCG
ATCGATTGGA CCAGCTATCT GCATCCCGAC GACAAGGATC GCTATCTGGC GCTGATCGCC
GGGCTGATGG TGTCGCCGCT GCAGGCCGAG GCCGAATTCC GGGTCAGGAC CGCATCCGGA
AGCTGGCGCT GGATCTTGGA GAAGATCACG CCGCGGATGG ACGGCGAACG GTCGATCGGC
CTGATCGCGT CGGGCATCGA CGTCACCGAC GTCAAGCTGT CCGAGGGGCT GTTGAGCGAG
GCCAACAGCC GGGTCGAACA GCAGGTCGAG GAGCGCACCC GCGAATTCCA GCGGCTCGCC
CACGCCGATC CGCTGACCGG AATCGCCAAT CGCCGGCTGC TGATCGAGCG GCTGGACGGC
GAAGTGGCGC GCGCCGCCAA AGCCGGCGGC GAACTGTCGG TGCTGTATGT CGATATCGAT
CACTTCAAGA GCATCAACGA CAATTTCGGA CATGCCGCCG GCGATCGCGT GCTGGTGCAG
CTCGCCGCCA CCATGAAGAG CCTGCTGCGG CAGACCGACC TGGTCGGGCG GATGGGCGGC
GAGGAATTCG TGGTGCTGCT GCTGAACACC GACCAGGCCG CCGCGCTGCG CGTTGCCGAC
CAGTTGCGCG AGGCGATCTC GCGCTGCGAA TTCGAGCTTA TCACCAGGCC GGTGACGATC
AGCGTCGGGG TCGCCGGTTA CGAAGCCGCC GAGGACGCGG CGAGCCTGCT CGCCCGCGCC
GATCACGCGC TGCTGCAAGC CAAGCGCTGC GGCCGCAATC AGTGCCGATT GGCGCCCGCC
CAAGGCGATG CGCTGATTTC GCTGTCGGCG TAG
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| Protein sequence | MVPFQWNALF ETGNARIDRQ HRTLFELTND LARAVQNGEK LPEISALVLK LRDYAATHFC
DEEQLMRCSA LAIQEKTRHA CAHRSFIKKV EDLAARRDLS NVEAVSEFLQ FLVTWLVTHI
LKLDHRMTKA LLRQPALDAD KRITVEQVLI SALMETERRF RVISDEAPTL IWICGIDGVR
DFANKAWFDL VGATPSADAP IDWTSYLHPD DKDRYLALIA GLMVSPLQAE AEFRVRTASG
SWRWILEKIT PRMDGERSIG LIASGIDVTD VKLSEGLLSE ANSRVEQQVE ERTREFQRLA
HADPLTGIAN RRLLIERLDG EVARAAKAGG ELSVLYVDID HFKSINDNFG HAAGDRVLVQ
LAATMKSLLR QTDLVGRMGG EEFVVLLLNT DQAAALRVAD QLREAISRCE FELITRPVTI
SVGVAGYEAA EDAASLLARA DHALLQAKRC GRNQCRLAPA QGDALISLSA
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