| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2123 |
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| Symbol | |
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| ID | 3973332 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 2322015 |
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| End bp | 2323922 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637925231 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_531996 |
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| Protein GI | 90423626 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00833547 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCCCAAC ACACCCCCCG AATGGCCCGA CTGCTCAGCC GCCCCGTGTC CGCCGCCATC
GTGATCGCGC TGTTCGTTGC GGCGATGAGC GGCGCCGTGA TCGGATTGGT GGCGTGGAAG
GCCGCGACGG CGCGGCAAAG CGAACTCGCC CAGCGTTCCG CCGCGAACGA GAACCTGGCG
CATTCGCTGG CCGAACAGGC CTCGCACGCG ATCCAGTCGG TCGACGTCGC GATGAGCAAC
ATCGCCGACA CGCGACCGCT GCAGGCTGCG GATTCGGAGC GCAGCAGGCG CCGTCTGAGC
GAGATCGTCG AGCGGCTGCC GCAGATCCAC GCCATCGCCA TCCTCGATGC CGACGGCAAA
ACCGGCACCT CCTCGCTCGC CGACCCGGTT CTTCCGGGCG ACGCGCTGGC GTCCGACCTT
GCTTATCACC GCGATCGCGC CGACCGTGCG CTGCACATCT TCGCGCTGCG GCTCGCCGGT
CAATCCGGCG TCGGGCTGTC GAAGCGATTG TCCCACGCCG ACGGCAGCTT CGCCGGTGTC
GTGGTGGCGA TCATCAACAC CGAGCATTTC AGTGCGCTGT ACCAGAGCTT TCAGCTCGGC
AAGCGCGGCA GCGTCAGCAT TCTGCGCGCC GACGGCGTGG TGCTGATGCA GTCGAAGCCG
GCGCTGTCCG CGACCGCGTC GCGCCACGAT CTGGCGCCGC AACCGTTGCC GGCGCCGTTC
ACCGGAACGC GCAAAGTCGT GGCCCGCGAC GGCGGGTGGC GCCACTACGG CTATGCGCAC
GCGCCGCGCT ACCCGATCGT CGTCGCGGTG TCGCAGCACG ACGACGATAT CCTGCAGGGT
TGGCGCGACG GACTGCGCTC CGATATCGCC GTCGCGGCGC TGCTGTTGTG CTGCGTCGTG
CTGCTGGCGG CCTTGCTCAC CTCGCAATTC CGGCTGCGGC TCTCGATCGA GCGCGCGTTG
CGCGAGCGCG AGACCCGCTA CCGGCTGCTC GCCGACAACA TCGCCGACGT GGTGATGCTG
CTCGACCGCG ACGCCAAGTT TCTCTACGTG TCGCCGTCGT CGCAAGCGGT GCTCGGTATC
GAGCCCCGGC GACCGCTCGG ACGATGCTGC TTCGACTTCA TTCTGCCGGC CGACATCCGA
TCGGTGCGGC GTGCCGCAGC ACGGTTGACC GATGCCACGG AAACCCGCAC CGCGTTGTTT
CGCATTGTGC GCGGCGACCG CGCGCAGGCC TGGGTGGAAG TCAATTTCAA GCTCGCCGCC
TCCGGCGACC CGGACGGCCA TGAGGTGGTG GCGGTGCTGC GCGACGTCAC CGAGCGCCAC
AAGATGGAAG ACGAACTCAA GGCGTTGAAT TTCCGGCTCG CGGAACTGGC CACCACGGAC
GGCCTCACCG AGCTCGCCAA CCGGCGCAGC ATGGACGACT TCCTGCGGCT GCACTTTGCG
GCACAGGATC AGCTCTCGCT GCTGTTGATC GACGTCGACC ACTTCAAGCG CTTCAATGAT
AGGTTTGGCC ACCAGGCCGG CGACGCTTGT CTCACGCGCA TCGCCAAGGT GTTGGCGGAG
GCCGCGCCGG CGCCCGGGCT CGCGGCGCGC TACGGCGGCG AGGAGTTCGC CATCATCCTG
CCCGGCGTCG CCGAACCGCA CGCGATTCGT ATAGCCGAAG CGGTCCGCCT CACCATCGCG
GCCCTGGCGA TTGCACATCC AAACGGCGCC GCCACCACGG TCACGGTGAG CATCGGCATC
GCCAGCAAGA CCAAGGCCAC CGCCAGCGAA GAGGACCTGG TGCGCGCCGC CGATCTGGCG
ATGTACGCGG CGAAACGAGG CGGCCGCAAT CGCAGCGTCG CCAGTTCGTC GCTACCCGAC
GATGAGAGCG GAGTCGTGCC GCTCAATCGG CTGATCTCCG CGGGATGA
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| Protein sequence | MPQHTPRMAR LLSRPVSAAI VIALFVAAMS GAVIGLVAWK AATARQSELA QRSAANENLA
HSLAEQASHA IQSVDVAMSN IADTRPLQAA DSERSRRRLS EIVERLPQIH AIAILDADGK
TGTSSLADPV LPGDALASDL AYHRDRADRA LHIFALRLAG QSGVGLSKRL SHADGSFAGV
VVAIINTEHF SALYQSFQLG KRGSVSILRA DGVVLMQSKP ALSATASRHD LAPQPLPAPF
TGTRKVVARD GGWRHYGYAH APRYPIVVAV SQHDDDILQG WRDGLRSDIA VAALLLCCVV
LLAALLTSQF RLRLSIERAL RERETRYRLL ADNIADVVML LDRDAKFLYV SPSSQAVLGI
EPRRPLGRCC FDFILPADIR SVRRAAARLT DATETRTALF RIVRGDRAQA WVEVNFKLAA
SGDPDGHEVV AVLRDVTERH KMEDELKALN FRLAELATTD GLTELANRRS MDDFLRLHFA
AQDQLSLLLI DVDHFKRFND RFGHQAGDAC LTRIAKVLAE AAPAPGLAAR YGGEEFAIIL
PGVAEPHAIR IAEAVRLTIA ALAIAHPNGA ATTVTVSIGI ASKTKATASE EDLVRAADLA
MYAAKRGGRN RSVASSSLPD DESGVVPLNR LISAG
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