| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2105 |
|---|
| Symbol | |
|---|
| ID | 3973661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 2306268 |
|---|
| End bp | 2307383 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637925213 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_531978 |
|---|
| Protein GI | 90423608 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.681994 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTGTT CGACCGGCTT GCAAAAATTG CGCTTTGTCG CAGCCATGAT CGGTTGCGCG
GTCCTACTGC TGTCGCCCGC CCGCGCCGAA CAGCGCGTCG TCAACTTCTA CAACTGGTCG
AACTACATCG CCCCCGGCGT GCTCGACGAG TTCAGCCGCG AGACCGGCAT CAAGGTGATC
TACGACACCT TCGACGGCAA CGAGACGCTG GAAACGCGGC TGTTGGCGGG AAAATCCGGC
TACGACGTGG TGGTTCCGAC CGCGTATTTC CTGCAGCGGC AGATCGCCGC CAATATTTTC
CAGAAGCTCG ACAAGGCGAA GCTGCCGAAC CTCGGCAACG CCTGGGACGT CGTGACCAAG
CGGCTGGCGA CCTACGATCC CGGCAACCGC TTTGCCGCGA ACTACATGTG GGGCACCACC
GGGATCGGCT ACAACGTCGC CGCAGTGCGC AAGATCCTCG GCGAGGGCGC TGTGATCGAC
AGCTGGGCCA CGGTGTTCAA GCCGGAGAAT CTGGCGAAAT TCACCGAGTG CGGCGTGCAC
ATGCTGGACT CGCCCGATGA TATTTTGCCG GCTGCGCTGA CCTATCTCGG CCTCGATCCG
AACTCCACCA AGCCGGCCGA TCTGGAAAAA GCCGCCGATC TGGTCGGCAA GATCCGACCC
TATGTCCGCA AGTTTCATTC CTCGGAATAT CTCAACGCGC TAGCGACCGG CGAAATCTGC
CTGGTGGTCG CCTGGTCGGG CGACATCATG CAGGCGCGCA GCCGCACCGC CGAGGCCAAC
AATGGCGTCG AGATCGGCTA TTCGATTCCG AAGGAAGGCG CGCAGATGTT CTTCGACAAT
CTGGCGATCC CGGCCGACGC CAAGAACGTC GCCGAGGCGC ACGAACTGAT CAACTATCTG
TACCGCCCCG ACGTCGCGGC GAAGAATTCC GGCTTCCTGT CCTACGCCAA CGGCAATCTG
GCCAGCCAGA AGCTGATCGA TCCGAAGGTG ATCGGCAACA AGATGGTGTT TCCGGATTCG
GCGACCGAGA AGCGGCTGTT CGTCATCACC GCGCGCGACG CCGCCACCCA GCGGGTGATC
AACCGGCTGT GGACCAAGGT GAAGACCGGG ATGTAG
|
|---|
| Protein sequence | MRCSTGLQKL RFVAAMIGCA VLLLSPARAE QRVVNFYNWS NYIAPGVLDE FSRETGIKVI
YDTFDGNETL ETRLLAGKSG YDVVVPTAYF LQRQIAANIF QKLDKAKLPN LGNAWDVVTK
RLATYDPGNR FAANYMWGTT GIGYNVAAVR KILGEGAVID SWATVFKPEN LAKFTECGVH
MLDSPDDILP AALTYLGLDP NSTKPADLEK AADLVGKIRP YVRKFHSSEY LNALATGEIC
LVVAWSGDIM QARSRTAEAN NGVEIGYSIP KEGAQMFFDN LAIPADAKNV AEAHELINYL
YRPDVAAKNS GFLSYANGNL ASQKLIDPKV IGNKMVFPDS ATEKRLFVIT ARDAATQRVI
NRLWTKVKTG M
|
|---|
| |