| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2094 |
|---|
| Symbol | |
|---|
| ID | 3971859 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 2293393 |
|---|
| End bp | 2295378 |
|---|
| Gene Length | 1986 bp |
|---|
| Protein Length | 661 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637925202 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_531967 |
|---|
| Protein GI | 90423597 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG5265] ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.181859 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.935873 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCCTC ACCACGCGCG GCCGGCTGAG CAGGCGACGC AAAGTCCCGA CGATTCGGCG
CCAAAGGCGA CCATGCTGGG CACGCTGGTG CACCTGTGGC CGTATATCTG GCCCGGCGAG
CGCTTCGATC TGAAGATGCG GGTGGTCTGG GCGATGGTGC TGCTGCTGAT CGCCAAGCTC
GCCACCATGG TGGTGCCGTT CACCTTCAAA TGGGCGATCG ACGCCTTGAC CGGAGCCGAC
ACCGCGCCGG TGGAGCCGTC GAACTGGACG CTGTGGCTGA TCGCCTCGCC GCTGATCATG
ACCGCGAGCT ACGGCGCGGT GCGGATCATC ATGGCGGTGC TGACGCAGTG GCGCGACGGC
ATGTTCGCCC AGGTGGCGAT GCATGCGGTG CGCAAGCTCG CCTACATGAC CTTCGTGCAT
ATGCACGAAT TGTCGCTGCG GTTTCACCTC GAGCGCAAGA CCGGCGGGCT GACCCGCGTG
CTGGAGCGCG GCCGCAACGG AATCGAAGTC ATCGTGCGGA TGGTGATCCT GCAGCTAGTG
CCGACCATCG TCGAGGTGAC GCTGCTGATG GGCGTGCTGC TGTGGCAGTT CGACTGGCGC
TACGTGGTGG TGACGCTGAT CACGGTGGTG ATCTACATGT ACTACACCTA TCTCGCCACC
GAATGGCGGA TCGGTATCCG CCGCAACATG AACGAGTCCG ACAGCGAGGC CAACACCAAG
GCGATCGATT CGCTGTTGAA CTACGAGACC GTGAAATATT TCAGCGCCGA GACCCGCGAA
GCCGAGCGCT ACGACCGCTC GATGGCGCGT TACGAGCACG CCAGCGTCAA GACCTACACC
TCGCTCGCCG TGCTCAACGC CGGCCAAGCG GTGATCTTCA CCTGCGGCCT GACCGCCACC
ATGCTGATGT GCGCGATCGG CGTGCGCAAC GGCACCAATA CCGTCGGCGA TTTCGTGATG
GTCAACGCGA TGATGATCCA GCTGTACCAG CCGCTGAATT TCATGGGCAT GGTGTATCGC
GAGATCAAGC AGGCGATCGT CGACATCGAG AAGATGTTCG GCGTTTTGAC CAAGAACCCC
GAGGTCAAGG ATCTGCCGGG CGCCAAGCCG CTGGTCGTTT CCAGCGGCAA CGTCCGCTTC
GACGATGTGC GGTTTGCCTA CGATCCGGAG CGGCCGATTC TGAAAGGGCT CAGCTTCGAG
GTGCCGGCCG GCAAGACCGT GGCGATCGTC GGGCCCTCCG GCGCCGGCAA GTCGACGATC
TCGCGGCTGT TGTTCCGGCT GTACGACGTC TCCGGCGGCA AGATCCTGAT CGACGGCCAG
GACATCCGCA AAGTGACGCA AGGCTCGCTG CGGGCCTCGA TCGGCATGGT GCCGCAGGAC
ACCGTGCTGT TCAACGACAC CATCCGCTAC AACATCCGCT ACGGCCGCTG GGACGCCAGC
GACGCCGAGG TGGAGGAGGC GGCGAAGACC GCGCAGATCG ACGCCTTCAT CCAGGCCTCG
CCGAAGGGCT ACGAGACCGA GGTCGGCGAG CGCGGCCTGA AATTGTCCGG CGGCGAAAAG
CAACGCGTGG CGATCGCCCG CACCGTGCTG AAGGCGCCGC CGATCCTGTT GCTGGATGAG
GCCACCTCGG CGCTCGACAG CCATACCGAA CAGGAGATCC AGGATGCGCT GGAGCGGGTA
TCCCGCAACC GTACGTCGCT GGTGATCGCG CACAGGCTTT CCACCATCGT CGGCGCCGAC
GAGATCATCG TGCTGGACCA GGGTCGCATT GTGGAGCGCG GCAAGCACGG TCAGCTTCTC
GCCGCAAACG GGCTTTACGC CAGTATGTGG AACAGGCAGC GCGAGGCGCA GGAGGCCCGT
GAAAAGCTGG CGCTGATCGG CGATGACGCA GCGCCGTCCC CGGCCCGCGC GCCGGCGATC
GACGATGTGG TGCCGGCGCG GGAGCCGGTG CACGACACCC TGGCTACGCC CGACGCTGCG
GAGTGA
|
|---|
| Protein sequence | MTPHHARPAE QATQSPDDSA PKATMLGTLV HLWPYIWPGE RFDLKMRVVW AMVLLLIAKL
ATMVVPFTFK WAIDALTGAD TAPVEPSNWT LWLIASPLIM TASYGAVRII MAVLTQWRDG
MFAQVAMHAV RKLAYMTFVH MHELSLRFHL ERKTGGLTRV LERGRNGIEV IVRMVILQLV
PTIVEVTLLM GVLLWQFDWR YVVVTLITVV IYMYYTYLAT EWRIGIRRNM NESDSEANTK
AIDSLLNYET VKYFSAETRE AERYDRSMAR YEHASVKTYT SLAVLNAGQA VIFTCGLTAT
MLMCAIGVRN GTNTVGDFVM VNAMMIQLYQ PLNFMGMVYR EIKQAIVDIE KMFGVLTKNP
EVKDLPGAKP LVVSSGNVRF DDVRFAYDPE RPILKGLSFE VPAGKTVAIV GPSGAGKSTI
SRLLFRLYDV SGGKILIDGQ DIRKVTQGSL RASIGMVPQD TVLFNDTIRY NIRYGRWDAS
DAEVEEAAKT AQIDAFIQAS PKGYETEVGE RGLKLSGGEK QRVAIARTVL KAPPILLLDE
ATSALDSHTE QEIQDALERV SRNRTSLVIA HRLSTIVGAD EIIVLDQGRI VERGKHGQLL
AANGLYASMW NRQREAQEAR EKLALIGDDA APSPARAPAI DDVVPAREPV HDTLATPDAA
E
|
|---|
| |