| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2075 |
|---|
| Symbol | |
|---|
| ID | 3974033 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 2272178 |
|---|
| End bp | 2272864 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637925183 |
|---|
| Product | phosphoglycolate phosphatase |
|---|
| Protein accession | YP_531948 |
|---|
| Protein GI | 90423578 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.299627 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.323596 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATCAT CTCGCATCAT CGTCTTCGAT CTCGACGGCA CCCTGGTCGA TACCGCGCCC
GACCTGATCA GCGCCCTCAA CCACATGCTG GTTCGCGAAG GCATGCCTCC GGTCGAATTC
CCCGCCGCCC GCAACATGAT CGGCGCCGGC GTCCGCAAAC TGATCGAGCG CGGCCTGGAG
ATCGACGGCC GGGTCACCAG CGCGGCCGAC ATCACCCGGC TGACCAACGA CTTCATCGAT
TATTACGCCG AGCATATCGC CGACGCCTCG CGCCCGTTCG AAGGCTTGGA TGAGGCCCTC
GATCAGCTGG CGGCCGATGG ATATCGCTTC GCGGTCTGCA CCAACAAGCT GGAGTGGCTG
GCGAAACTGC TGCTGGACAA GCTGGATATG ACCAAACGCT TTTCAGCCAT CTGCGGCGGC
GACACCTTCG GCGTGGCGAA GCCGGACCCG GTGATCCTGC GACAGACGGT GGCCATGGCA
GGAGCCCAGA TGGCCGGCGC GATCATGGTC GGCGACGCCG GCCCCGACGT CGGCGTTGCC
CGCCGCGCCG GGATCCCGGT GATCGGAGTG GAGTTCGGTT ATACCGACGT TCCGATCGCC
GAGCTGAAGC CGGATCGGCT GATCGGACAT ATGCGCGACC TGCCGGCCGC CGTCGAGAGC
CTGTCCGCCG TCCAGGCGCC TCGCTAA
|
|---|
| Protein sequence | MTSSRIIVFD LDGTLVDTAP DLISALNHML VREGMPPVEF PAARNMIGAG VRKLIERGLE
IDGRVTSAAD ITRLTNDFID YYAEHIADAS RPFEGLDEAL DQLAADGYRF AVCTNKLEWL
AKLLLDKLDM TKRFSAICGG DTFGVAKPDP VILRQTVAMA GAQMAGAIMV GDAGPDVGVA
RRAGIPVIGV EFGYTDVPIA ELKPDRLIGH MRDLPAAVES LSAVQAPR
|
|---|
| |