| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2071 |
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| Symbol | |
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| ID | 3974029 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 2267791 |
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| End bp | 2269629 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637925179 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_531944 |
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| Protein GI | 90423574 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.388249 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCGA TGTTCATTCA CTACATGGCG CCGATCATGT TCGCCTCGCT GGTGCTGTTT
CTGCTGCTAG GTTACCCGGT GGCGTTCTCG CTGGCGGCCA ACGGCTTGTT GTTCGCCTTC
ATCGGCATCG AACTCGGCCT GTTCCGCCCG GACTTCATGC AGGCGCTGCC AGAACGCGTC
TACGGCGTAA TGAACAACGA CACGCTGTTG GCGATCCCAT TCTTCACCTT CATGGGGCTG
GTGCTGGAGC GATCCGGCAT GGCCGAGGAT CTACTGGAAA CCATCGGGCA ATTGTTCGGC
TCGATCCGCG GCGGCATCGC CTACGCCGTG GTGTTCGTCG GAGCATTGCT CGCCGCCACC
ACCGGCGTGG TCGCCGCCTC GGTGATCTCG ATGGGGCTGA TCTCGCTGCC GATCATGCTG
CGCTACGGTT ACGACCGCCG CGTCGCCACC GGCGTGATCG CCGCGTCGGG AACGCTGGCG
CAGATCATTC CGCCGTCGCT GGTGCTGATC GTGATGGCCG ACCAGCTCGG CCGTTCGGTC
GGCGACATGT ACGAAGGCGC GTTCATTCCC GGCATCGTGC TGGCGCTGAT GTATGCCGGC
TATATCTTCC TGGTCACGCT GATCGCCCCG AAAGCGGTGC CGGGCCTGCC GTTGGAAGCG
CAAACGCTGC GCGAATTGGA GACCGCGAAG CATCCGTTGA TCCTGCCGTT GGCGGCGCTG
TCGGCGGCGG CATCGGCGTA TTTCTTCACG GTGCATGTCG GGCTGTTCGA CTGGACGCAG
CCGGCCTTCG ACATGATCGG TCTCGGCAAG CTGGCGCTGC AGGGCTTCTG GTTCGTCATT
CTGCTGGGAA TCCTGACGCG TCCCTTCATC GGCATCATCC GCACCATGAC GATGTCGCTG
TTCCTGGTGG TAGCCGGCTC GACCGCGATC GGCATCGTCG CGATGAGCTT CACCGACGTG
AAATCCGGCG CCGACTATGT GGTGCTGACG ATGTCGGTCA CCGTGGCGCT GTCGTTCGTG
CTGGCGGTGA TCAACCACGT CACCCGCCTC AAACTGCTCT CCAAGCTCGC CGAGCAGGTG
GTGTTCGTGA TGGTGCCGCC GCTCGGGCTG ATCTTCCTGG TGCTCGGCAC GATTTTCATC
GGCGTCGCCA CCCCGACCGA GGGCGGCGCG ATGGGCGCCG CCGGCGCCAT CCTGCTGGCG
CTGATGAAGG GCCGGCTGAC CTTCGATCTC ACCAAGCAGG CCACCGAGGC CACCGCGAAA
CTCTCCGCCT TCGTGGTGTT CATCCTGGTC GGCGCGCGGG TGTTCTCGCT GACCTTCTAC
GGCGTCGACG GCCACCGCTG GGTCGAGGAG CTGCTGGTCG GGCTGCCCGG CGGCCAGGTC
GGCTTCCTGA TCTTCGTCAA CGCCTTCGTG TTCATCCTGG CGTTCTTCCT GGATTTCTTC
GAACTCGCCT TCATCGTGAT TCCGCTGTTG GGACCCGCCG CCGAAAAGCT CGGCATCGAT
CTGATCTGGT TCGGGGTGAT GCTCGGCGTC AACATGCAGA CCTCGTTCAT GCATCCGCCG
TTCGGCTTTG CGCTGTTCTA CCTGCGCTCG GTGGCGCCGA AGGAATCCTA TCTCGACCGG
ATCAGCGGCA AGCGGATGGA GCCGGTCACC ACCGGGCAGA TCTATTGGGG CGCGGTGCCG
TTCGTGATCA TCCAGGTGAT CATGGTCGCC CTGGTGATCA CCTTCCCGGC GATGGTGATG
CACTACAAGG GCGTCGCCTC CACCGTCGAT CCCTCCAAGA TCGAATTCGA CCTGCCGCCG
ATGGACCAGG CGCCGCTGGA TTTCGGGCCG TCGAAGTAG
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| Protein sequence | MTAMFIHYMA PIMFASLVLF LLLGYPVAFS LAANGLLFAF IGIELGLFRP DFMQALPERV
YGVMNNDTLL AIPFFTFMGL VLERSGMAED LLETIGQLFG SIRGGIAYAV VFVGALLAAT
TGVVAASVIS MGLISLPIML RYGYDRRVAT GVIAASGTLA QIIPPSLVLI VMADQLGRSV
GDMYEGAFIP GIVLALMYAG YIFLVTLIAP KAVPGLPLEA QTLRELETAK HPLILPLAAL
SAAASAYFFT VHVGLFDWTQ PAFDMIGLGK LALQGFWFVI LLGILTRPFI GIIRTMTMSL
FLVVAGSTAI GIVAMSFTDV KSGADYVVLT MSVTVALSFV LAVINHVTRL KLLSKLAEQV
VFVMVPPLGL IFLVLGTIFI GVATPTEGGA MGAAGAILLA LMKGRLTFDL TKQATEATAK
LSAFVVFILV GARVFSLTFY GVDGHRWVEE LLVGLPGGQV GFLIFVNAFV FILAFFLDFF
ELAFIVIPLL GPAAEKLGID LIWFGVMLGV NMQTSFMHPP FGFALFYLRS VAPKESYLDR
ISGKRMEPVT TGQIYWGAVP FVIIQVIMVA LVITFPAMVM HYKGVASTVD PSKIEFDLPP
MDQAPLDFGP SK
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