| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2064 |
|---|
| Symbol | |
|---|
| ID | 3974022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 2258477 |
|---|
| End bp | 2260078 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637925172 |
|---|
| Product | periplasmic sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_531937 |
|---|
| Protein GI | 90423567 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0167055 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0634721 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATCC CCGCCGATAG GCCTGAGGTG GTTCAGCTTC CGGCTGAACC ACCGGTCGTG
ACACCGGCGC GCAACCGACG CGCGGCGGCG CAGCGGGTCC GTGAGGCCCG CGATCGGCTG
ACCTCGACCA GCGGCACCCG CCCGGCATTC GATCACGAAC TGCTGCGGCA ATACGCCCAG
ATGCGGCAAT CGGCTTCGAT CGTGGTGATC CTGCTGGTGG TGGCGACCGG GCTGTTGTTC
GCGATCTGGA TCCAGCCGCT GTCGGCGGCG GCCTGGACCT GCGGCATGCT GTGCATCCAT
GCCGTGATGA TCCGCAATTG CGGCCGCTTC CTCGGCGAAC AGCAGTCGCC GTTGCGGACC
CGCAAATGGC GAACCCGCTT CGTGCTGCTC GACCTGTTGT ATGGCGTGTG CTGGACCGCG
ATCCTGGTGC ACCCGCCGGG CGTCGAGGTG GTGTCCAACA CGCTGTTGAT GTTCCTGATG
CTGCTGGTGG TGGCGGTGTC GAGCATGCTG GCGGCCAATC TGCCGATCGC CGCGCTGGCG
GCGACCGCGC CGGTGACCGC GGCGATCGCG GCCAACTTCC TGTTGAGCGG CACGTTCGAC
AACTACATTC TGGCGCTGCT GACGGTGGCG GCGGAAGGTT ATTTCGCGCT GCTCGCGCAC
CGGCTGCATT CCACCACGCT GGCGACGCTG GAAGCCCGCG CCGAAAAGGA CGCGCTGATC
GGCGAACTCG AACAGGCCAA GGCGATCTCC GACGAGGCGC GGCATCGCGC CGAAGCCGCC
AACGTCGCCA AGTCGCGGTT CCTGGCGCAG ATGAGCCACG AACTGCGCAC CCCGCTGAAC
GCCATCCTGG GCTTTTCCGA AGTGATGAAG AGCGAGATCT TCGGCGCCCA CGCGGTCGCG
GTGTACAAGG ACTACTCCGC CGACATCCAT AATTCCGGCG TGCATCTGTT GAACCTGATC
AACGAGATCC TGGATCTGTC GCGGATCGAG GCCGGCCGCT ACGAGCTCAA CGAGGAAGCG
GTGTCGCTGG TCCACGTCGT CGCCGACTGC CATCATCTGT TGAAGCTGCG CGCCTCGAGC
CGCGGCATCA CCATCCACGA GGTGTTCGAA CAGGGCATGC CGCGGATCTG GGGCGACGAA
CGCGCGGCGC GGCAGATCGT GCTCAACCTA TTGTCGAACG CCATCAAGTT CACCCCGCAA
GGCGGCGAGA TCTGGCTCAA GGTCGGCTGG ACCGCATCCG GCGGGCAATA TCTCAGCGTC
AAGGACACCG GCTCGGGCAT CGCCGAGGAC GAAATTCCGA TCGTGCTGGC CTCGTTCGGC
CAGGGCTCCA ACTCGATCAA ATCCGCCGAA CAGGGCGCCG GGCTCGGGTT GCCGATCGCC
AAGAGCCTGA TCGACATGCA CGGCGGCACT TTCACGCTGA AATCGAAGCT GCGGATCGGC
ACCGAAGTGA TCGTCACCTT CCCGCCGGAG CGGGTGATGT CGGCGCTGGC CCCGATGGCC
GACGAGGCGC CGCCGCTGCA GCCGTCCTAC GACATCAGCC TGTCGGATGA AAACCGCAGG
GTTCGCAACA AACCGATCAT GAGCGCGGGG ACCGGATTGT GA
|
|---|
| Protein sequence | MSIPADRPEV VQLPAEPPVV TPARNRRAAA QRVREARDRL TSTSGTRPAF DHELLRQYAQ
MRQSASIVVI LLVVATGLLF AIWIQPLSAA AWTCGMLCIH AVMIRNCGRF LGEQQSPLRT
RKWRTRFVLL DLLYGVCWTA ILVHPPGVEV VSNTLLMFLM LLVVAVSSML AANLPIAALA
ATAPVTAAIA ANFLLSGTFD NYILALLTVA AEGYFALLAH RLHSTTLATL EARAEKDALI
GELEQAKAIS DEARHRAEAA NVAKSRFLAQ MSHELRTPLN AILGFSEVMK SEIFGAHAVA
VYKDYSADIH NSGVHLLNLI NEILDLSRIE AGRYELNEEA VSLVHVVADC HHLLKLRASS
RGITIHEVFE QGMPRIWGDE RAARQIVLNL LSNAIKFTPQ GGEIWLKVGW TASGGQYLSV
KDTGSGIAED EIPIVLASFG QGSNSIKSAE QGAGLGLPIA KSLIDMHGGT FTLKSKLRIG
TEVIVTFPPE RVMSALAPMA DEAPPLQPSY DISLSDENRR VRNKPIMSAG TGL
|
|---|
| |