| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2037 |
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| Symbol | |
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| ID | 3973956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 2219176 |
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| End bp | 2220516 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637925146 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_531911 |
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| Protein GI | 90423541 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.35853 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGGCTAT CGCGAAATAG ACTGCTATAT GGGGTGGCGT TGATCGTCGC GGCGACCAGC
AGCGCCTACG TGCTCTTGAT CACCCGAAGC AACGGCGTCG GGATCAATGG CGCGATCCAC
TATCGCACCG CGTCGGTCGA GCGCCGGCCG TTTGTCGCGG TGGTTCGCGC CAGCGGATCG
CTGCAGCCGA TCTCCCAAGT CCTGGTCGGC TCGCAAGTGT CGGGGCAGGT GGTGGAGATT
CTGGTCAAGC CGAACGACCA TGTCGAGCGA GATCAGGTGA TTGCCCGGAT CTCGTCCGAT
CAGATCGGCA AGCGCTACCA GGGCCTGCTG GCGCAGCTGG CAAGCGCACG GGCCGACGTG
TCGTTGCGGG AGGCGAGAGT GGAACTGTCG GCCGTGCAGG TGGAGCGGGC GCGATCGGAG
GTGGCCGATC GGGAAGCCAA ACTGCGCAAT GCCGGCTTGG CCGAAGACAT CGCCGGACGG
CAGCTGGCGC GGCGGCGGGA ATTGTCGAAG ACCGGCGCGA TCAGCGTCGC CGATCTCGAC
TCGGTCACCG TGCAGTCGCG CCAGGCCGAG ACGACGACCG CGTCGGCGGA AGCCCAACTC
GCCACCGCGC GGATCGCGGT GGATGCCGCG CGGCAGGAGC ACGAGATTGC CAGACGCGAG
TTGGTGCTCG CAACCGCCAC GGTCGATATC CAGCAGTTGA AGGCCGAGGA GGCCGCGGTC
GAACTGGAGC ACACCAATAT CGTCGCTCCG GTCCGCGGTG TGATCCTCCA GCGAACCGTA
GAACTGGGCC AGACCGTCGC GGCCTCGTTC GCGACGCCGA CGCTGTTCAC CCTCGCCGAG
AGCCTGGAAC GCATGGAGCT GCATCTGGTG ATCGACGAAT CCGCGGTGAA GCGCGTCCGC
CGCGGACAGC AGGTGATTTT CTCGGTGCCG GCGCAGCCGC TACGCGAGCT GAAGGGGACG
ATCTTGGCAA TCCGTGTGGC GCCGCAGATC AACCAGAACG TCGTCTCCTA CACCGCGCTG
GTCAGCGTCG AGAATCCGGA CGGGGAGCTG TTTCCCGGCA TGACCGCGAC GGCTCGCATT
CTAACCGACG AAATTCCCGA AGCGCTGGTG GTTCCGAACG CGGGGCTGCG CTGGCGACCG
CCGAACGCCA AACCCGAGGA GCGTTCGACG CAGACGGTTT ACGTGCTGGA CCGCCCCGAC
GCGCCTCGCC CGGTGCCGGT GGAGATCGGT GTCTCCGACG GCAGCGTGAC GACCGTGCTG
GCGGGGGCCA TCCACGCCGG CGATCGCGTC ATCCTGGGAA CCGGCGCGGC CAACGGCGGT
CCCCGGATCA GCCTGCAATG A
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| Protein sequence | MRLSRNRLLY GVALIVAATS SAYVLLITRS NGVGINGAIH YRTASVERRP FVAVVRASGS
LQPISQVLVG SQVSGQVVEI LVKPNDHVER DQVIARISSD QIGKRYQGLL AQLASARADV
SLREARVELS AVQVERARSE VADREAKLRN AGLAEDIAGR QLARRRELSK TGAISVADLD
SVTVQSRQAE TTTASAEAQL ATARIAVDAA RQEHEIARRE LVLATATVDI QQLKAEEAAV
ELEHTNIVAP VRGVILQRTV ELGQTVAASF ATPTLFTLAE SLERMELHLV IDESAVKRVR
RGQQVIFSVP AQPLRELKGT ILAIRVAPQI NQNVVSYTAL VSVENPDGEL FPGMTATARI
LTDEIPEALV VPNAGLRWRP PNAKPEERST QTVYVLDRPD APRPVPVEIG VSDGSVTTVL
AGAIHAGDRV ILGTGAANGG PRISLQ
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