| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2019 |
|---|
| Symbol | |
|---|
| ID | 3973919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 2201967 |
|---|
| End bp | 2203427 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637925128 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_531893 |
|---|
| Protein GI | 90423523 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.437741 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCACCTTT TGAGATATGG TACGCAATAC AAAATGGCTG TCAATTTGAA TAATGACACC
GTTTCAATCC TTCATAGCGC GTTGCGCGAA GGCATGGGAC CGAAGTACCG GCGGCTGGCG
CGACGGCTCG AGGCACTAAT CCTGAGCCGC GGGTTACGGA CCGGCGAAAA GTTACCGGCT
CACCGCGACC TGGCTGCGCT CCTGGGCGTG ACGGCAGGAA CGATTAGTCG GGCTTACGGC
GAGTTGCGGA AGATCGGGCT GATTTCGTCC CGCGTGGGCG ACGGCACCTT CGTGCTGGAA
TTGGCAAAGA AGAAGCGCAA GGAAACCGAC TTCAAGCCTT ACGGGGGCGG CGAACCGGGT
CGCTACGACC TCAGTCGGAA TACGGCGATC CCCGGCCGCA TGCTAACATC GGTCAGCGAA
ACGTTGCGGC GTCTGGCGCT GCAGCCGGAG GCTCTCGAAG AACTGCTGCA ATATGGGCCG
GAGCTTGGAT TGAATCGCCA CCGCGCGGCG GGAGCCCGGT GGCTCAGCAA CCATCATTCC
GACGCCAACG CCGAACAGAT CGTCTGCGTC AACGGCGGCC AGCACGGCTT GTTCTGCGTG
CTCATGGCGC TGCTCGAACG TGGTGACACC CTGGTCTCCG AACAGTTCAC CTATCCGGGA
TTGATATCGG CCTGCCGAAT TCTTGGCATC AATCTGGTCG GCCTCAAGAT GGATGACGAA
GGGCTGATTC CGAAATCGCT CGATGCAGTC TGCCGGACTG CAACGGTCAG AGCGCTGTTC
TGCACGCCGA CGCTGCAGAA TCCCACCACG GCGGTGCTTG GCCTGGAACG GCGCGCCGAG
ATCGCCCGGC TTTGTCGCGC GCATAATCTA TTGGTCATCG AAGATGACGC GCACGGCGTC
TTGGTCAAGG ATCGTCACCC GCATATCGGA CATTTCGTAC CGGAACGAAG CATTCTGATT
TCAAGCCTGT CAAAAGCGAT CGCGGCCGGC CTGAGGGTCG GCTACGTCCA TGCGCCGTTG
CCATTGGTCG GACGCATCGG CACCATGGTG CGAACCAATT GCTGGATGGC GAACCCTCTG
GCCTTCGAGA TGGTCAGTCT CTGGATCGAG GACGGCAGCG CGCTGCGCTT CCTCGAAGAC
CAGATCGAGG AAATCGTTCG ACGCAAAACC CTCGTTCAAC CGCTTCTGGA CGGCTTCGTC
GTCAAAACCC ATCCAAGGAG TCCGCACTTC TGGATCGAAG TTCCAAGCCC TTGGCGCGCC
TCAGAGATTG CAAGCGAGTT AAGGCAGAAG AACTGTCTCG TTGCGCCTGC GGAGGCATTC
GCCGTGGACC GTGACCGCAC CGTCCAATTT CTGCGGGCTA GCGTTAGCAG CGCTGAAAAG
ACCGACGCTG CCATCAGTGA AGGATTTCGC ATTCTCTCCG CCGTATTGAG AAATCCTTCA
ACAACTACCG CGATCCACTA G
|
|---|
| Protein sequence | MHLLRYGTQY KMAVNLNNDT VSILHSALRE GMGPKYRRLA RRLEALILSR GLRTGEKLPA
HRDLAALLGV TAGTISRAYG ELRKIGLISS RVGDGTFVLE LAKKKRKETD FKPYGGGEPG
RYDLSRNTAI PGRMLTSVSE TLRRLALQPE ALEELLQYGP ELGLNRHRAA GARWLSNHHS
DANAEQIVCV NGGQHGLFCV LMALLERGDT LVSEQFTYPG LISACRILGI NLVGLKMDDE
GLIPKSLDAV CRTATVRALF CTPTLQNPTT AVLGLERRAE IARLCRAHNL LVIEDDAHGV
LVKDRHPHIG HFVPERSILI SSLSKAIAAG LRVGYVHAPL PLVGRIGTMV RTNCWMANPL
AFEMVSLWIE DGSALRFLED QIEEIVRRKT LVQPLLDGFV VKTHPRSPHF WIEVPSPWRA
SEIASELRQK NCLVAPAEAF AVDRDRTVQF LRASVSSAEK TDAAISEGFR ILSAVLRNPS
TTTAIH
|
|---|
| |