| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2009 |
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| Symbol | |
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| ID | 3973872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 2186759 |
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| End bp | 2188165 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637925119 |
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| Product | sigma-54 factor, interaction region |
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| Protein accession | YP_531884 |
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| Protein GI | 90423514 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.813919 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGATG GGGCCCTCCT GATAGACCAG GACTCCCGCA TCGTCTGGCT TAACGAGAAG
CACGTCTGGT TCAGCCCAAA GCAGATGACC TTGTTGGGGC TCGGACCCGA CGCCTGCGCC
AAGGCGGTCG GCAAGCCTGT GGAGAGCCTC ATCCCGCACA GCCGCATGCG CGAAGTTGTG
GAAACCGGGC GCTCTATTCC ACTCGATGTC ATAAAGTATG GCGAGCACAC GCTTCTGGTG
AGCCGGCTGC CGTTACGGGA TCAAACCGGG GCCGTCATCG GCGCGATTTC TTTCTCTCTC
AAGAACAGCG TCACACTGCT TCGGCCGATC GCGGATCGCT TCAACAAGCT GCAATCGCGT
CTGGTCCTTA TGGAGAAGAA GCTCGCGGCC GCCCGCACAT CGAAATACAC GGTGGAGAAT
CTTGTGGGCT TCAGTCCCGC CATGCTCCGG TTGAAACGGC TGATCCGAAA AGGCGGCCAG
ATCAACTCGT CCGCCCTTCT GTTGGGCGAA ACCGGGACTG GTAAGGAGCT GGCGGCGCAT
GCCATCCATG CGGCTTCGGA TCGGGTGAAT GGCCCCTTCG TCGGCCTCAA CGTTGCTGCC
ATTCCCGAGA ACCTGCTCGA GGCGGAATGC TTCGGCGTCG CGCCCGGAGC CTATACGGGT
GCCAGCCATC AGCCGCGTCC CGGCAAATTC CAGTTGGCGC ATGGCGGCAC GCTGTTCCTT
GACGAGATCG GCGACATGCC GTTGTCCTTG CAGGTCAAGC TGCTGCGCGT GCTGCAGGAG
CGCGAGGTCG AGCCGCTCGG GTCCAATCAG GTGGTGAAGG TCGACGTCCG TATTATCGCG
GCAACAAGTC GGGCGCTCCC GGAAATGATC AAGGAAGGCA AATTCCGCGC CGATCTGTTC
TACCGTCTCA ACGTCTTTCC GGTTCACCTG CCTCCGCTGC GGGACCGTAA GGAGGATCTG
GAGATCCTCG CCTCGCTGTT TTCAGAACGG ACCGCAGCCA CTTTCGACCA GCCGATGCGC
AACGTCACGC CGCAAGCGTT GGAGTTGCTG CACGCCCACG ACTGGCCCGG AAACGTGCGC
GAATTGGCCA ATGTCATCGA GCAAGTCTAT GCGCGCACCG ATGGGGATCA AATTACGGCC
GACGACTTCG CCGAGATTCT TCCGCAAATC GCCCCCCGTC TCGCTGCGCC GAGCCGGAAA
CGCCCGCTGG CCGAAGCGGT CGATGAGTAC GAGCGCTCGC TCATCCTGAC CGCGCTCACC
GAGGCGAAAG GCAACAAGCT GGAAACTGCG CGGAAGCTCG GACTGGCACG CACCAATCTG
TATGCGAAGA TGAGCAGGCA CAACATCTCG CTCGATACGC AATATGGTGT TGCCGCGGAA
GCTGAACAGC GAGAGCTGGG GGCCTGA
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| Protein sequence | MIDGALLIDQ DSRIVWLNEK HVWFSPKQMT LLGLGPDACA KAVGKPVESL IPHSRMREVV
ETGRSIPLDV IKYGEHTLLV SRLPLRDQTG AVIGAISFSL KNSVTLLRPI ADRFNKLQSR
LVLMEKKLAA ARTSKYTVEN LVGFSPAMLR LKRLIRKGGQ INSSALLLGE TGTGKELAAH
AIHAASDRVN GPFVGLNVAA IPENLLEAEC FGVAPGAYTG ASHQPRPGKF QLAHGGTLFL
DEIGDMPLSL QVKLLRVLQE REVEPLGSNQ VVKVDVRIIA ATSRALPEMI KEGKFRADLF
YRLNVFPVHL PPLRDRKEDL EILASLFSER TAATFDQPMR NVTPQALELL HAHDWPGNVR
ELANVIEQVY ARTDGDQITA DDFAEILPQI APRLAAPSRK RPLAEAVDEY ERSLILTALT
EAKGNKLETA RKLGLARTNL YAKMSRHNIS LDTQYGVAAE AEQRELGA
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