Gene RPC_2009 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_2009 
Symbol 
ID3973872 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp2186759 
End bp2188165 
Gene Length1407 bp 
Protein Length468 aa 
Translation table11 
GC content61% 
IMG OID637925119 
Productsigma-54 factor, interaction region 
Protein accessionYP_531884 
Protein GI90423514 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.813919 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGATG GGGCCCTCCT GATAGACCAG GACTCCCGCA TCGTCTGGCT TAACGAGAAG 
CACGTCTGGT TCAGCCCAAA GCAGATGACC TTGTTGGGGC TCGGACCCGA CGCCTGCGCC
AAGGCGGTCG GCAAGCCTGT GGAGAGCCTC ATCCCGCACA GCCGCATGCG CGAAGTTGTG
GAAACCGGGC GCTCTATTCC ACTCGATGTC ATAAAGTATG GCGAGCACAC GCTTCTGGTG
AGCCGGCTGC CGTTACGGGA TCAAACCGGG GCCGTCATCG GCGCGATTTC TTTCTCTCTC
AAGAACAGCG TCACACTGCT TCGGCCGATC GCGGATCGCT TCAACAAGCT GCAATCGCGT
CTGGTCCTTA TGGAGAAGAA GCTCGCGGCC GCCCGCACAT CGAAATACAC GGTGGAGAAT
CTTGTGGGCT TCAGTCCCGC CATGCTCCGG TTGAAACGGC TGATCCGAAA AGGCGGCCAG
ATCAACTCGT CCGCCCTTCT GTTGGGCGAA ACCGGGACTG GTAAGGAGCT GGCGGCGCAT
GCCATCCATG CGGCTTCGGA TCGGGTGAAT GGCCCCTTCG TCGGCCTCAA CGTTGCTGCC
ATTCCCGAGA ACCTGCTCGA GGCGGAATGC TTCGGCGTCG CGCCCGGAGC CTATACGGGT
GCCAGCCATC AGCCGCGTCC CGGCAAATTC CAGTTGGCGC ATGGCGGCAC GCTGTTCCTT
GACGAGATCG GCGACATGCC GTTGTCCTTG CAGGTCAAGC TGCTGCGCGT GCTGCAGGAG
CGCGAGGTCG AGCCGCTCGG GTCCAATCAG GTGGTGAAGG TCGACGTCCG TATTATCGCG
GCAACAAGTC GGGCGCTCCC GGAAATGATC AAGGAAGGCA AATTCCGCGC CGATCTGTTC
TACCGTCTCA ACGTCTTTCC GGTTCACCTG CCTCCGCTGC GGGACCGTAA GGAGGATCTG
GAGATCCTCG CCTCGCTGTT TTCAGAACGG ACCGCAGCCA CTTTCGACCA GCCGATGCGC
AACGTCACGC CGCAAGCGTT GGAGTTGCTG CACGCCCACG ACTGGCCCGG AAACGTGCGC
GAATTGGCCA ATGTCATCGA GCAAGTCTAT GCGCGCACCG ATGGGGATCA AATTACGGCC
GACGACTTCG CCGAGATTCT TCCGCAAATC GCCCCCCGTC TCGCTGCGCC GAGCCGGAAA
CGCCCGCTGG CCGAAGCGGT CGATGAGTAC GAGCGCTCGC TCATCCTGAC CGCGCTCACC
GAGGCGAAAG GCAACAAGCT GGAAACTGCG CGGAAGCTCG GACTGGCACG CACCAATCTG
TATGCGAAGA TGAGCAGGCA CAACATCTCG CTCGATACGC AATATGGTGT TGCCGCGGAA
GCTGAACAGC GAGAGCTGGG GGCCTGA
 
Protein sequence
MIDGALLIDQ DSRIVWLNEK HVWFSPKQMT LLGLGPDACA KAVGKPVESL IPHSRMREVV 
ETGRSIPLDV IKYGEHTLLV SRLPLRDQTG AVIGAISFSL KNSVTLLRPI ADRFNKLQSR
LVLMEKKLAA ARTSKYTVEN LVGFSPAMLR LKRLIRKGGQ INSSALLLGE TGTGKELAAH
AIHAASDRVN GPFVGLNVAA IPENLLEAEC FGVAPGAYTG ASHQPRPGKF QLAHGGTLFL
DEIGDMPLSL QVKLLRVLQE REVEPLGSNQ VVKVDVRIIA ATSRALPEMI KEGKFRADLF
YRLNVFPVHL PPLRDRKEDL EILASLFSER TAATFDQPMR NVTPQALELL HAHDWPGNVR
ELANVIEQVY ARTDGDQITA DDFAEILPQI APRLAAPSRK RPLAEAVDEY ERSLILTALT
EAKGNKLETA RKLGLARTNL YAKMSRHNIS LDTQYGVAAE AEQRELGA