| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1981 |
|---|
| Symbol | |
|---|
| ID | 3973772 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 2156387 |
|---|
| End bp | 2156860 |
|---|
| Gene Length | 474 bp |
|---|
| Protein Length | 157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637925092 |
|---|
| Product | biopolymer transport protein ExbD/TolR |
|---|
| Protein accession | YP_531857 |
|---|
| Protein GI | 90423487 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0848] Biopolymer transport protein |
|---|
| TIGRFAM ID | [TIGR02803] TonB system transport protein ExbD, group 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0594702 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTGA CGTTGAAAGA CCCGCACGAC GGCGACCTTG CCGAACTGTC CGAAATCAAC
GTCACGCCGT TCATCGACGT GATGCTGGTG CTGCTGATCA TCTTCATGGT GGCGGCGCCG
TTGTCGACGG TGGATGTCGG CGTCGATCTG CCGACCTCCA CCGCGCAGCC GCAGCCGCGG
CCCGACAAGC CGGTGTATCT CACCGTCAAG CCGGACCTGT CGCTGGCGCT CGGCAACCAG
GATATCGCCC GCGAGGCGTT GCAGGCCGCG CTCGACGGCC AGACGGCGAG CGATCGCGAG
CAACGCGTGT TCCTGCGCGC CGACGGGGTG GTGCCGTATC GCGAACTGAT GGCGGTGATG
AACCTGCTGC GCGGTGCCGG CTATCTCAAG GTGGCGCTGG TTGCGCTGGA AGACCTTGGG
GCGGGCGGTG CCATTGCCGC CACGCCGGCG ATGCCGCAAG CGCCGCGGCC ATGA
|
|---|
| Protein sequence | MAVTLKDPHD GDLAELSEIN VTPFIDVMLV LLIIFMVAAP LSTVDVGVDL PTSTAQPQPR
PDKPVYLTVK PDLSLALGNQ DIAREALQAA LDGQTASDRE QRVFLRADGV VPYRELMAVM
NLLRGAGYLK VALVALEDLG AGGAIAATPA MPQAPRP
|
|---|
| |