| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1963 |
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| Symbol | |
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| ID | 3973636 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 2134431 |
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| End bp | 2136374 |
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| Gene Length | 1944 bp |
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| Protein Length | 647 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637925074 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_531839 |
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| Protein GI | 90423469 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGACG CCCGGAATCC GGGAGACGCC GCGGGTCGCC ATGCGCGACG TCTGCTGAAC
CGGGGCGAAA TCCCGCCGCC GGGTCTGCTC AACACCACCG TCAGCCGCTC CTGGGAGCGC
TGTCTGAAGT CCGGCCTCGA ACCGCTGGCC GGACCGGCGA CGCCCGACCC GGTGTCGCCG
CCGCAGCTCA AACAGGCGCT GGAACAGCGG CGCGAATGGC TGCGCCAAGC CCGACCTATT
GTCGAATACC TTTACAGCCA AGTCAGTGGC TCGGGCAGCA TGGTGATCCT GGCCGACGAC
CAGGGCCTGC TGATCGAAGC GCTCGGCGAT GCGGAGTTTC TCAAGCGGGC CGAGCGGGTA
GCGCTGCAGC CGGGCGCCTG CTGGCACGAG CAGGACCGCG GCACCAACGC CATCGGTACG
GCGCTGGCCG AGCGGGCGCC GGTGGCGGTG CACGGCAGCG AGCACTTCCT CGACTGCAAC
CGCTTCCTCA CCTGCACCGC CGCCCCGGTG ATGGGCAGCG ACGGCAAGCT GCTAGGCGTG
ATCGACATTT CCGGCCACCA CAGCGCCCGC CACCCGCACA CGCTGGGGCT GGTGCAGATC
GCCAGTCACA TGATCGAGAG CCGGGTGTTC GAGCTGTGGC ACGAAGGGGC GACGCGGTTG
CGACTGCATC CGCAGGCCGA GGGCATCGGC ACCTTGGCCG ATGGGTTGCT GGCCCTCGAT
GAGGACGGCC GCATCGTCGG CGCCAATCGG ACCGCGCTCA ACCTGCTGGG GCTGGCGGAC
ATCGAGATCG GCCATGTCGG CATCGACGGC GTACTCGCGT TGGCCTCGGA CGGGCTGCTG
CAACAGGCCC GGCGGCACCC CGGAGCCGTG CTCAACGCCG AGACGCGCTC TGGCCGGCGG
CTGTTCGTCA GGGCCGAACC GGGACGATCG CTCGCGCCCA GCGCCCTGCC CCGCCGGACA
GCCCCGGCGC GCGACGCGCT AGCCGAACTG GACACCGGCG ACGAGCGGAT GCGGCAATGC
CTGGAGCGCG CCCGCAAGGT GGTGGGCAAG CCGATCCCGA TACTGCTGCA GGGCGAATCC
GGGGTCGGCA AGGAGCTGGT GGCCGCCGCG ATCCACGCCT CCGGCCCGCG GCAGAAACGA
GCCATGGTGG CGGTCAATTG CGCGGCGCTG CCGGAGCATC TGATCGAAGC CGAGCTGTTC
GGCTATGCCC CCGGCGCCTT CACCGGAGCC CGCCGCGAGG GCTCTCCGGG GCGGATCCGC
GAGGCCGATG GCGGCACGCT GTTTCTCGAC GAAATCGGCG ACATGCCGCT GTCGCTGCAG
AGCCGGCTGT TGCGCGTGCT GCAGGAGCGC CAAGTGGTGC CGCTCGGCGG CGGCAAGCCG
ACCACGGTCG ATTTCGCGCT GATCGCCGCC AGCCACCGGC CTTTGAAGCT CGAAGTCGAG
CATGGCCGGT TTCGCGCCGA TCTCTACTAC CGCCTCAACG GCATCACCCT GACGCTGCCC
TCGCTGCGAA CGCGTAGCGA CTTTCCCGTT CTGATGAGCC GCCTGCTCGA GCGCTTCGAG
CCCGGCGCCG GATTGCTGGT CGAGCCGAGC GTCGTAGCGG CGCTGGCGGA GTATTCCTGG
CCCGGCAATT TGCGCGAGCT GGCCAACGTG CTGCGCTTCG CCTCGGCGCT GCTGGACCCC
GGCGAGACGG TGATCGGCTG GCAGCATCTG CCGGAGGATC TGGTCGACGA GCTGCGGCGA
CCACAGCGGG CGCGGCCGGA CAACTGCGCG GGCTTGCCGT CGCTGCGGGC GGCCTCGGAT
TCGCTGATCG AGCGCGCGCT GCACAACAGC GCCGGCAACC TCTCCGAAGC CGCCCGCCGG
CTCGGCATCA GCCGCACCAC GCTCTATCGC CGCATCGGCG GCGACCACCG CCGCAGCGTC
AGGGTCAGCC GTGAGGTGCC GTGA
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| Protein sequence | MTDARNPGDA AGRHARRLLN RGEIPPPGLL NTTVSRSWER CLKSGLEPLA GPATPDPVSP
PQLKQALEQR REWLRQARPI VEYLYSQVSG SGSMVILADD QGLLIEALGD AEFLKRAERV
ALQPGACWHE QDRGTNAIGT ALAERAPVAV HGSEHFLDCN RFLTCTAAPV MGSDGKLLGV
IDISGHHSAR HPHTLGLVQI ASHMIESRVF ELWHEGATRL RLHPQAEGIG TLADGLLALD
EDGRIVGANR TALNLLGLAD IEIGHVGIDG VLALASDGLL QQARRHPGAV LNAETRSGRR
LFVRAEPGRS LAPSALPRRT APARDALAEL DTGDERMRQC LERARKVVGK PIPILLQGES
GVGKELVAAA IHASGPRQKR AMVAVNCAAL PEHLIEAELF GYAPGAFTGA RREGSPGRIR
EADGGTLFLD EIGDMPLSLQ SRLLRVLQER QVVPLGGGKP TTVDFALIAA SHRPLKLEVE
HGRFRADLYY RLNGITLTLP SLRTRSDFPV LMSRLLERFE PGAGLLVEPS VVAALAEYSW
PGNLRELANV LRFASALLDP GETVIGWQHL PEDLVDELRR PQRARPDNCA GLPSLRAASD
SLIERALHNS AGNLSEAARR LGISRTTLYR RIGGDHRRSV RVSREVP
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