Gene RPC_1938 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_1938 
Symbol 
ID3973570 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp2107069 
End bp2108196 
Gene Length1128 bp 
Protein Length375 aa 
Translation table11 
GC content65% 
IMG OID637925049 
ProductFAD-dependent pyridine nucleotide-disulphide oxidoreductase 
Protein accessionYP_531814 
Protein GI90423444 
COG category[C] Energy production and conversion 
COG ID[COG1252] NADH dehydrogenase, FAD-containing subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAAACA TCACCATCAT CGGCTCGGGT TTCGCCGCGC TGACCGCGGC GCGACAATTG 
CGCCGGCGCA AGGTCGACGT CAGCATCACG ATGATCTCGC CGCGGCAGGA TTTGCACTTT
CTGCCCAGCG TGATCTGGAT CCCGGCGCGG TTGCGCAGCG GCGACCGGCT CAAGGTTCCA
TTGGCGCATT TCTTCCGGAA GTATCGGATC GATTTCGTTC AGGCTTCGGT CACTGGGTTG
AGAGACAACG GCCGTACGGT GGTCACCGAC CGTGGCGAAT TCAGCAACGA CCACTTGATC
GTGGCGAGCG GCGGCAAGTT CATCCGCAAA CTGCCCGGGA TCGAGCACGC CTTGATCCCA
TGCGACGGCA TCGCCGCGGG CGAGGACATC GCCAGACGGC TCGATGCGTT GAAGGGCGGC
AGCATCGCGG TGGGCTTCGC CAGCAATCCG GAAGAGCCCG GCGCGATGCG CGGCGGCCCG
ATGTTCGAAT TCTTGTTCAT CATCGACACG CTGTTACGGA AGCGCGGCCG GCGTCCCGGC
TTCCAGATCG TGTTTTTCAG CCCTGCCGTG CGGCCCGGTG CGCGGCTCGG CGAGCGCGCC
GTCGATGGCC TGCTGGCAGA GATGAAGCGC CGCGGCATCG CCACTAAGCT CGGCCGCAAG
ATCCTGCGCT TCGAACCACG CAAGGTGGTG ACGGAAAGCG ACGAGATCGA TGCCGACCTG
ATCCTGTTCA TGCCCGGGCT CACCGGGCCG GCATGGCTGG CGGATTCAGG CCTGCCGCTA
TCCGCCGGCG GCATGGTCAA GGCCGACGCG ATGTGCCGCG TCGAGGGGAT GGCCAACGTC
TGGGTCGCCG GCGACGCCGG GTCGTTTCCG GGGCCGGACT GGATGCCCAA ACAGGCCCAT
CAGGCGGATC TTCAGGCCAT CGCGGTGGCC GCCAACATCG CCGCGATCGA AGCCGGAGGC
GAGCCGTCCT ACCGCTTCAA ACCCGAATTG GTGTGCATCG TCGATACGCT GGACGCGGGG
ATGCTGGTGT TCCGCAACGA GCGCTTCAGC TTCGTCGGAC CGAAGCTGAA GATCTTCCAC
TGGCTGAAGC GGATCTTCGA ACGCCACTAC CTGACCACAT TCCGCTGA
 
Protein sequence
MTNITIIGSG FAALTAARQL RRRKVDVSIT MISPRQDLHF LPSVIWIPAR LRSGDRLKVP 
LAHFFRKYRI DFVQASVTGL RDNGRTVVTD RGEFSNDHLI VASGGKFIRK LPGIEHALIP
CDGIAAGEDI ARRLDALKGG SIAVGFASNP EEPGAMRGGP MFEFLFIIDT LLRKRGRRPG
FQIVFFSPAV RPGARLGERA VDGLLAEMKR RGIATKLGRK ILRFEPRKVV TESDEIDADL
ILFMPGLTGP AWLADSGLPL SAGGMVKADA MCRVEGMANV WVAGDAGSFP GPDWMPKQAH
QADLQAIAVA ANIAAIEAGG EPSYRFKPEL VCIVDTLDAG MLVFRNERFS FVGPKLKIFH
WLKRIFERHY LTTFR