| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1903 |
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| Symbol | |
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| ID | 3973459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 2074007 |
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| End bp | 2077207 |
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| Gene Length | 3201 bp |
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| Protein Length | 1066 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637925014 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_531779 |
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| Protein GI | 90423409 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.819338 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTGT CGAAATTTTT CATCGATCGT CCGATCTTCG CCGGCGTGTT GTCGGTGCTG
ATCTTCCTGG CCGGGCTGAT CTCGCTGTTG TCGATGCCGA TCTCGGAATA TCCCGACGTG
GTGCCGCCCT CGGTGGTGGT GCGCGCCACC TATCCGGGCG CCAACCCGAA AGTGATCGCC
GAGACGGTGG CAACCCCGAT CGAGGAGCAG ATCAACGGCG TCGAAGGCAT GCTCTATATG
GCGAGCCAGG CCACCACCGA CGGCGCGATG ACGCTGACGG TGACCTTCCG GCTCGGCACC
GACCCCGACA AGGCGCAGCA ACTGGTGCAG AATCGCGTGG CGCAAGCCGA GCCGCGGCTG
CCCGCGGTGG TGCGCCAGCT CGGCATCATC ACCAAGAAGA GTTCGCCCGA CCTCACTATG
GTGGTGCATC TGTTGTCGCC GAACAACCGC TACGACATGA CGTATTTGCG TAACTACGCG
GTGCTCAACG TCAAGGATCG GCTGGCGCGG CTCGATGGCG TCGGCGACGT GCAGCTGTAC
GGCGCCGGCG ACTATTCGAT GCGGATCTGG GTCGATCCGC AGAAGGCGGC GGAGCACGCG
CTGACCGCCA GCGACATCGT CAAGGCGATC CAGGCGCAGA ACGTCGAAGC CGCCGCCGGC
GTGGTCGGCG CCTCGCCGAG CGTCAAGGGG CTCGACCTGC AGCTCTCGGT CAACGCCGAG
GGCCGGCTCT CCACCGAAGA GCAATTCCGC GACATCGTGG TCAAGAGCGG CGCGCACGGC
GAGGTGACCC GGCTGCGCGA CGTGGCGCGG ATCGAACTCG GCGCCTCCGA ATACGGCCTG
CGCTCGCTGC TCGACAACAA GCAGGCGGTG GCGATTCCGA TCTTCCAGGC GCCGGGCTCC
AACGCGTTGC AGATTTCCGA CAGCGTTCGC GCCACGATGG CCGAGATCCA AAAGACGATG
CCGGAGGGCG TGGCGTACAA GATCGTCTAT GACCCGACGC AATTCGTCCG CTTTTCCATC
GAAGCCGTGA TCCACACGCT GCTGGAAGCC ATCGCGCTGG TGGTGGTGGT GGTGATCCTG
TTCCTGCAGA CTTGGCGGGC GTCGATCATC CCGCTGTTGG CGGTGCCGGT GTCGATCGTC
GGCACCTTCG CGGTGATGCA CATGTTCGGC TTTTCCATCA ACGCGCTCAG CCTGTTCGGT
CTGGTGCTGG CGATCGGCAT CGTGGTCGAC GACGCCATCG TGGTGGTGGA GAACGTCGAA
CGCAACATCG AGGCCGGCCG CTCGCCGCGC GACGCCACCT ACCAGGCGAT GAAGGAAGTC
TCGGGGCCGA TCATCGCCAT CGCCTTGGTG CTGATCGCGG TATTCGTGCC GCTGGCTTTC
ATCAGCGGCC TCACCGGCCA ATTCTACAAG CAGTTCGCGC TGACGATTGC GATCTCCACG
GTGATCTCGG CGATCAATTC GCTGACGCTG TCGCCGGCGC TGGCGGCACT GTTGCTGAAG
GGCCATAACG ATCCGAAGGA TCGGCTGACG CGGATTCTCG ACCGCGCGCT CGGCTGGTTC
TTCCGCGGCT TCAACCGCGC CTTCGCGCGC TCGGCGCACG GCTACAGCCG CGGCGTCGGC
GGCGTGATCT CCGGCAAGGC GCTGGTGATC GGCGTCTATG TGGTGCTGGT GATCGCCACT
GCCGGCCTGT TCAAGCTGGT GCCGAGCGGC TTCGTGCCCG GTCAGGACAA GCAGTACCTG
GTCGGCTTTG CGCGGCTTCC CGACGGCGCC ACGCTGGACC GCAGCGAAGC CGTCATTCGC
CAGATGAGCG ACATCGCGGC GACCCAGCCC GGCGTGGAAA GCTCGGTGGC ATTCCCCGGA
CTGTCGATCA GCGGCTTCAC CAACTCGTCC AACGCCGGCA TCGTGTTCTC GACGCTGAAG
CCGTTCGAGG AGCGCAAGGA CGCCTCGCTC AGCGGCGGCG CGATCGCCAT GGAGCTGAAC
AAGAAATACG CCGGCATCCA GGAGGCGTTC ATCGCGATGT TTCCGCCGCC GCCGGTCAAC
GGCCTCGGCA CCATCGGCGG CTTCAAGCTG CAGATCGAGG ACCGCGCCGG GCTCGGCTAC
GACGCGCTCA ACGAGGCCAC CAAGGCGTTC CTGGCGGCGA TGGCCAAGGC GCCGGAGATC
GCCGGAACGT TCTCCAGCTT CCAGGTCAAC GTGCCGCAAT TGTTCGCCGA CATCGACCGC
ACCAAGGCGT TGCAGCTCGG CGTGCCGGTG ACCGAGGTGT TCAACACGCT GCAGATCTAT
CTCGGCTCCT ACTACGTCAA CGACTTCAAC AAATTCGGCC GCACCTATTC GGTCTATGTG
CAGGCCGACG CGCCGTTCCG GGCGCGGGCC GACGACATCC GCCAGCTCAA GGTGCGCTCG
GCGTCGGGCG ACATGGTGCC GCTGGCGGCG CTGTTGAAGA TCCACCAGAG CGCCGGCCCG
GAACGCGCGA TCCGCTACAA CGGGTTTCTG TCGTCGGACG TCAACGCCGC GGCGGCGCCG
GGCTATTCCT CGGGCCAGGC GCAGGACGCC GCGACCCGGA TCGCGGCTGA GACTCTGCCG
CCGGGCTTCG CCTTCGAATG GACCGATCTG ACCTATCAGC AGTTCATCGC CGGCAATTCC
GGGCTGTGGG TGTTTCCTTT GGCGATCCTG TTGGTGTTCC TGGTGCTGGC CGCGTTGTAC
GAAAGCCTGA CGCTGCCGTT GTCGATCATC ATGATCGTGC CGATGGGGCT ATTGGCGGCG
ATGTTCGGGG TCTGGCTGTC GAAGGGCGAC AACAACGTGT TCACCCAGAT CGGGCTGATC
GTGCTGGTCG GACTGTCGGC GAAGAACGCC ATTCTGATCG TCGAATTCGC CCGCGAACTG
GAATTCGCCG GCCGCACCCC GATCAAGGCG GCGATCGAGG CCAGCCGGCT GCGGTTGCGC
CCGATCCTGA TGACCTCGAT GGCGTTCATC ATGGGCGTGC TGCCGCTGGT GCTGTCGACC
GGCGCCGGCG CGGAAATGCG CCGCGCCATG GGGGTGGCGG TGTTCTCCGG CATGATCGGG
GTGACGCTGT TCGGTCTGTT CCTGACCCCG GTGTTCTATG TGCTGCTGCG CACCGTCACC
GGCTCGAAGC CGCTGACCCA GCACGGCAGC GGCGGAACGC TGGCGGCGGA GAGCGAGGCG
GTCGAGCCCG CGACCGTCTA G
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| Protein sequence | MNLSKFFIDR PIFAGVLSVL IFLAGLISLL SMPISEYPDV VPPSVVVRAT YPGANPKVIA
ETVATPIEEQ INGVEGMLYM ASQATTDGAM TLTVTFRLGT DPDKAQQLVQ NRVAQAEPRL
PAVVRQLGII TKKSSPDLTM VVHLLSPNNR YDMTYLRNYA VLNVKDRLAR LDGVGDVQLY
GAGDYSMRIW VDPQKAAEHA LTASDIVKAI QAQNVEAAAG VVGASPSVKG LDLQLSVNAE
GRLSTEEQFR DIVVKSGAHG EVTRLRDVAR IELGASEYGL RSLLDNKQAV AIPIFQAPGS
NALQISDSVR ATMAEIQKTM PEGVAYKIVY DPTQFVRFSI EAVIHTLLEA IALVVVVVIL
FLQTWRASII PLLAVPVSIV GTFAVMHMFG FSINALSLFG LVLAIGIVVD DAIVVVENVE
RNIEAGRSPR DATYQAMKEV SGPIIAIALV LIAVFVPLAF ISGLTGQFYK QFALTIAIST
VISAINSLTL SPALAALLLK GHNDPKDRLT RILDRALGWF FRGFNRAFAR SAHGYSRGVG
GVISGKALVI GVYVVLVIAT AGLFKLVPSG FVPGQDKQYL VGFARLPDGA TLDRSEAVIR
QMSDIAATQP GVESSVAFPG LSISGFTNSS NAGIVFSTLK PFEERKDASL SGGAIAMELN
KKYAGIQEAF IAMFPPPPVN GLGTIGGFKL QIEDRAGLGY DALNEATKAF LAAMAKAPEI
AGTFSSFQVN VPQLFADIDR TKALQLGVPV TEVFNTLQIY LGSYYVNDFN KFGRTYSVYV
QADAPFRARA DDIRQLKVRS ASGDMVPLAA LLKIHQSAGP ERAIRYNGFL SSDVNAAAAP
GYSSGQAQDA ATRIAAETLP PGFAFEWTDL TYQQFIAGNS GLWVFPLAIL LVFLVLAALY
ESLTLPLSII MIVPMGLLAA MFGVWLSKGD NNVFTQIGLI VLVGLSAKNA ILIVEFAREL
EFAGRTPIKA AIEASRLRLR PILMTSMAFI MGVLPLVLST GAGAEMRRAM GVAVFSGMIG
VTLFGLFLTP VFYVLLRTVT GSKPLTQHGS GGTLAAESEA VEPATV
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