| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1893 |
|---|
| Symbol | |
|---|
| ID | 3973411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 2064853 |
|---|
| End bp | 2066226 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637925004 |
|---|
| Product | tricarballylate dehydrogenase |
|---|
| Protein accession | YP_531769 |
|---|
| Protein GI | 90423399 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | [TIGR02485] precorrin 3B synthase CobZ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.291034 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGCG CATCCCCCGC GACGACGATC GATGTCTTGG TGGTCGGCGG CGGCAGCGCG
GCGCTGTGCG CGGCGATCGC GGCGCGACGC CTCGGCGCAA AGGTGCGGCT GGTCGAGCAG
GCGCCTTCGA GCTTGCGCGG CGGCAACAGC CGCCACGCGC GCAACTTTCG CCTGATGCAT
GACGAAGCGC ATTGGTACGT GCCGGACAGC TACGGCGAGG CGGCGTTCCT CGGCGATCTT
CGCCGCGTCA CCGCGGGGGC CACCGACGAG GTTTTGGCGC GGCTGTTGAT TCGCGGCTCG
GCGAGCATCG CGCCCTGGCT GCAAGAGAAC GGCGTCGCGC TGCAGGATCC GCGCAGCGGG
GTGATGCCGC ATTCCAAGCG CACCGCGTTC TTTCTCGGCG GCGGCAAGGC GATGGTCAAC
GCGCTCTATG CCACCGCGGC CGCGGTCGGC GTCGAGATCG GCTATGACAG CGAGGTGGTG
GCGCTGCATC TCGACGATGA ACATTGCAGC AAGGCGGTGA TCGCGCGCGC CGGCATTGCC
GAAACGGTCG CCGCAAAGAG CGTGGTGCTA GCTTGCGGCG GCCATCAGGC CGACCGCGCC
TGGTTGCGCG AGAGTTTTGG CGACGTCGCC GACGGGTTGG TGATCCGCGG CACGCCCTAT
GTCACCGGAC GCGTGCTGCG CCTGCTGCTC GAGGCCGGCG CCAAGCCGGT CGGCGATCCG
GCGCAAGCCC ACATCGTCGC GGTCGATGCC CGTGGGCCCG CGGTCGACGG CGGCATCGTC
ACCCGAATCA CCGCGATCCC CTACGGCATC GTGGTCGATC GCAACGCGCA GCGATTCCAT
GACGAAGGCG AAGACGCCCG CAAGACGCAT TACGCCCGCT GGGGGGCGCG GATCGCGCAA
TGCGACGGGC AAATCGCCTA TCTGATCATG GACGCCGCCG GCCGGGCCCG GGCATTGCCG
ACCGCACTGC CGCCAATCGA GGCGGACAGC CTCAACGAGC TTGCCGGCAA ACTCGAACTC
GATGCGGCGG CGCTGAGCGC GACGCTCGGT GCATTCAACG CCGCCGTCCG CAGCACCGGC
GCCACCGAGG CTTTGGTGCC GCCGAAAAGC CACGGCGCAA AGCCGCTCAC GGAGCCGCCG
TTCGCCGCCT ACCCGATGCG GCCGGGGCTG ACCTTCACGC ATTTCGGCGT CGCGGTGGAC
GAGCGGATGC GGGTGCAGAC CAAAGACGGC GACCGGCTCG ACAATATCTT TGCCGCCGGC
ATGATCATGG CGGCGAATGT GCTCGGCCGC GGCTATCTGG CCGGGCTCGG CGTCACGTTG
TCGGCGGTGT TCGGGCGCCT CGCAGGCGAG GAGGCTGCGC GCCATGGCCG ATGA
|
|---|
| Protein sequence | MTGASPATTI DVLVVGGGSA ALCAAIAARR LGAKVRLVEQ APSSLRGGNS RHARNFRLMH
DEAHWYVPDS YGEAAFLGDL RRVTAGATDE VLARLLIRGS ASIAPWLQEN GVALQDPRSG
VMPHSKRTAF FLGGGKAMVN ALYATAAAVG VEIGYDSEVV ALHLDDEHCS KAVIARAGIA
ETVAAKSVVL ACGGHQADRA WLRESFGDVA DGLVIRGTPY VTGRVLRLLL EAGAKPVGDP
AQAHIVAVDA RGPAVDGGIV TRITAIPYGI VVDRNAQRFH DEGEDARKTH YARWGARIAQ
CDGQIAYLIM DAAGRARALP TALPPIEADS LNELAGKLEL DAAALSATLG AFNAAVRSTG
ATEALVPPKS HGAKPLTEPP FAAYPMRPGL TFTHFGVAVD ERMRVQTKDG DRLDNIFAAG
MIMAANVLGR GYLAGLGVTL SAVFGRLAGE EAARHGR
|
|---|
| |