| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1868 |
|---|
| Symbol | |
|---|
| ID | 3973385 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 2033319 |
|---|
| End bp | 2034536 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637924979 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_531744 |
|---|
| Protein GI | 90423374 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAGG CTCGTCGCGT GGCGATCGTT GTCGTATTGA TCGTCGCAGC CGTCGCGGGG
TGGCTGATCA AGAATAGCTT ATTTCCGAAG CCGGCGGAGA ACTTGGTGAC GGCGGCCGTG
AAAGTTGCCG ATATCGAAGA AACCGTGCTG GCCAGCGGCA CGCTGAAGCC GATCAAGATG
GTCGCGGTCG GCGCCCAGGT GTCCGGACGT GTGCTCTCGC TCAAGGTCAA GATCGGCGAC
AAGGTCAAAC AGGGCGACCT GATCGCGCAG ATCGATCCGG TGACCCGGCA GAACGATCTG
CGCACCTCGG AAGCCGCGCT GCAGAACATG CACGCGCAGC GCGCCGAGAA GGAAGCCACG
CTGGCGCTGG CCGAGGCCTC GCTCGCCCGC CACCAGCTGA CCTTTGCGCA GAAGGCCACC
TCGCGCGCCG ATTTCGACAC CGCCGACGCC ACCGTGAAAC AGACCCGCGC GCAGATCGCC
GCACTCGACG CCCAGATCAC CGAAGCCCAG GTGTCGGTGG AAAACGCCCG CGTCAATCTC
GATTACACCA GGATCATCGC GCCGATCGAC GGCACCGTGC TGTCGGTGGT GACCCAGGAG
GGCCAGACCG TCAACGCGGT GCAGTCGGCG CCGACCATCG TCATCCTCGG CCAGGTCGAA
CTGATGACGA TCCGCGCCGA GATATCCGAG GTCGACGTCA TCAAGGTCCG CCCCGGTCAG
GAGGTTTACT TCAACATCCT CGGCGACCCC GATCATCGCT ACAGCGCGCG GCTGGACTTC
ATCGAACCGG CCCCGGAATC GATCAAGAAC GACAGCAGTT TCAGTTCGAG CAGCGTGACC
ACCAGCTCAT CGACGTCGTC ATCGACCTCG ACCTCGGCGA TCTACTACAA CGGCATCTTC
ACTGCGCCGA ACTCCGATGG TCGGCTGCGT ACCTACATGA CCGCTGAAGT TCACGTCGTG
GTGGCGCAGG CCCATCAGGT ACCGACCATT CCGTCGGCGG CGCTGGCGCA GCGCAACCCC
GACGGCAGCT ATCAGGTGGA CGTCGTGGAG CCCGGCGGCG CGGTGGCGTC GCGCGCGGTG
CGGATCGGCA TCAACAACAA GCTGAACGCG GAAGTCACCG CCGGCCTCGC CGCCGGAGAT
CAAGTGGTGA TCCGAAAGAC CGCGGGCGAC ACTCAGCCGT CATCGCCGCC GCGGCGGCCG
CCGCCGCCGG GAATGTGA
|
|---|
| Protein sequence | MFKARRVAIV VVLIVAAVAG WLIKNSLFPK PAENLVTAAV KVADIEETVL ASGTLKPIKM
VAVGAQVSGR VLSLKVKIGD KVKQGDLIAQ IDPVTRQNDL RTSEAALQNM HAQRAEKEAT
LALAEASLAR HQLTFAQKAT SRADFDTADA TVKQTRAQIA ALDAQITEAQ VSVENARVNL
DYTRIIAPID GTVLSVVTQE GQTVNAVQSA PTIVILGQVE LMTIRAEISE VDVIKVRPGQ
EVYFNILGDP DHRYSARLDF IEPAPESIKN DSSFSSSSVT TSSSTSSSTS TSAIYYNGIF
TAPNSDGRLR TYMTAEVHVV VAQAHQVPTI PSAALAQRNP DGSYQVDVVE PGGAVASRAV
RIGINNKLNA EVTAGLAAGD QVVIRKTAGD TQPSSPPRRP PPPGM
|
|---|
| |