Gene RPC_1787 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_1787 
Symbol 
ID3972052 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp1939352 
End bp1941625 
Gene Length2274 bp 
Protein Length757 aa 
Translation table11 
GC content66% 
IMG OID637924900 
Productpenicillin-binding protein 1A 
Protein accessionYP_531665 
Protein GI90423295 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.495648 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0540885 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGTCAGA TCGTGCCACC CCAGTGGAAG ACCAAGATCC GGCATTTCTT GCTGGATTTC 
GATGCGCGCA TTGATTCCAC GCTGTTTTCT TCGCTGGTCG GGTTGCGCGA ACTGTACGAG
CGGTTCTCCA CCTTCATGGA CCGCTTCCAT GTCGGCCGCT GGAAGCGCTG GGTGTTCATC
GAGCCGTTGT CGGAGGCCGC CACCATCGGG CTGTGCGGAC TGATCCTGAT GCTGGCGCTT
GCAGTGCCGG CGTTCCGCGA GACCGCCGAC GACGACTGGC TGAAGAAATC CGATCTGGCG
GTGAGCTTCC TCGATCGCTA CGGCAATCCG ATCGGCAATC GCGGCATCAA GCACAACGAC
TCGATCCCGC TGGAAGACTT CCCGGACAAT CTGATCAAGG CGACGCTCGC CACCGAAGAC
CGCCGCTTCT ACGATCATTT CGGCATCGAC ATCGCCGGCA CCGCGCGCGC GCTGGTTACC
AACGCGCAGG CCGGCGGCGT GCGCCAGGGC GGCTCCTCGA TCACCCAGCA ACTCGCCAAG
AACCTGTTCC TGTCGAACGA GCGCACCATC GAGCGCAAGG TCAACGAGGC GTTCCTGGCG
ATCTGGCTGG AGACCCGGCT GACCAAGAAC GAAATCCTCA AGCTCTATCT CGACCGCGCC
TATATGGGCG GCGGCACTTT CGGCGTCGAC GGCGCGGCGC ATTTCTACTT CAACAAGTCG
GCGCGCGACG TCAATCTCGC GGAGTCCGCG ATGCTGGCCG GGCTGTTCAA GGCGCCGACT
AAATACGCCC CGCACATCAA CCTGCCGGCG GCGCGCGCCC GCGCCAACGT GGTGCTCGAC
AACATGGTCG AGGCCGGCTT CATGACCGAA GGCCAAGTGT TCGGCGCCCG GCGCAACCCC
GCCACCGCGG TCGATCGCCG CGACGAGAAT TCGCCGAACT GGTATCTCGA CTGGGCGTTC
GACGAGATGC GCAAGCTGGT CGACACCTTT CCGAAATCCT ATGTCGAGCG GGTGTTCGTG
GTGCGCACCG CGATCGACAT GAACGTGCAG CGCGCCGCCG AAGCCGCGAT CGAAGACCAG
CTGCGGCAAT TCGGTCGCGA CTATCACGCG ACGCAAGCCG CCACCGTGGT GTCCGATCTC
GACGGCGGCA TCCGCGCCAT GGTCGGCGGC CGCGATTACG GCGCCAGCCA GTTCAACCGC
GCCGTCGACG CCTATCGGCA GCCGGGTTCG TCGTTCAAGC CTTATGTCTA CACCACCGCG
CTGCTGAACG GCTTCAAGCC GACCTCGATC GTGGTCGACG GCCCGGTGTG CATTGGCAAT
TGGTGCCCGC AGAACTACGG CCACTCTTAT TCCGGCGCGG TGACGCTGAC CCAGGCGATC
ACCCATTCGA TCAACGTGGT GCCGGTGAAG TTGTCGATCG CGCTCGGCGG CAAGTCGCCG
AACCCGGCCA AGGCCGGCCG CGCCAAGATC GTCGAAGTGG CGCGGCGCTT CGGCATCAAG
GCGCCGCTGC CGGATACGCC GTCGCTGCCG ATCGGCGCCG ACGAAGTCAC CGTGCTGGAG
CACGCGGTGG CCTACGCCAC CTTCCCCAAC AAAGGCCGCT CGGTGACGCC GCATGCGGTG
CTGGAAGTCC GCACCGGCGC CGGCGATCTG GTGTGGCGGT TCGACCGCGA CGGCAAGAAG
CCGCTGCAGG CGATCCCCGC CTCGGTCGCC GCCGACATGG CGGGGATGAT GAGCCACGTC
GTCAGTGAAG GCACCGCGCG GCGCGCCGCG CTCGACGGCA TTCCGACCGC CGGCAAGACC
GGCACCACCA ATGCGTATCG CGACGCCTGG TTCGTCGGCT ACACCGGCAA CTTCAGCTGC
GCGGTGTGGT ACGGCAACGA CGACTACTCG CCGACCAACC GGCTGACCGG CGGCTCGCTG
CCGGCGCAGA CTTGGCACGA CATCATGCTG GCGGCGCATC AGGGCGTCGA GATCCGCGAA
ATTGCCGGCA TCGGCGCCGG CACCAAGCTG CCGCCGACCG CCGCCAACGC CGCCGCCAAC
CTCGCCTCGA AGACCCCCGA CACCCGGCAA GGCCCGCCGC CGATCCTGAC CCGGCGCGGC
GCCGATATCC TGGTGCGGGT CGAAAAGATG TTTGACGAGG TCAGCAAGAC GCTCAACAAG
CTTCCGCCGG GCGAACCGGT CAAGCCGGTG TCCTCCACCT CCGTCGCGTT CCCGGACAGC
TTCGCCTCAG CAACGCGCAG CGACCCCGCG GGTGCTGCGC CGCGCAAGAA TTGA
 
Protein sequence
MRQIVPPQWK TKIRHFLLDF DARIDSTLFS SLVGLRELYE RFSTFMDRFH VGRWKRWVFI 
EPLSEAATIG LCGLILMLAL AVPAFRETAD DDWLKKSDLA VSFLDRYGNP IGNRGIKHND
SIPLEDFPDN LIKATLATED RRFYDHFGID IAGTARALVT NAQAGGVRQG GSSITQQLAK
NLFLSNERTI ERKVNEAFLA IWLETRLTKN EILKLYLDRA YMGGGTFGVD GAAHFYFNKS
ARDVNLAESA MLAGLFKAPT KYAPHINLPA ARARANVVLD NMVEAGFMTE GQVFGARRNP
ATAVDRRDEN SPNWYLDWAF DEMRKLVDTF PKSYVERVFV VRTAIDMNVQ RAAEAAIEDQ
LRQFGRDYHA TQAATVVSDL DGGIRAMVGG RDYGASQFNR AVDAYRQPGS SFKPYVYTTA
LLNGFKPTSI VVDGPVCIGN WCPQNYGHSY SGAVTLTQAI THSINVVPVK LSIALGGKSP
NPAKAGRAKI VEVARRFGIK APLPDTPSLP IGADEVTVLE HAVAYATFPN KGRSVTPHAV
LEVRTGAGDL VWRFDRDGKK PLQAIPASVA ADMAGMMSHV VSEGTARRAA LDGIPTAGKT
GTTNAYRDAW FVGYTGNFSC AVWYGNDDYS PTNRLTGGSL PAQTWHDIML AAHQGVEIRE
IAGIGAGTKL PPTAANAAAN LASKTPDTRQ GPPPILTRRG ADILVRVEKM FDEVSKTLNK
LPPGEPVKPV SSTSVAFPDS FASATRSDPA GAAPRKN