Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_1787 |
Symbol | |
ID | 3972052 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 1939352 |
End bp | 1941625 |
Gene Length | 2274 bp |
Protein Length | 757 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637924900 |
Product | penicillin-binding protein 1A |
Protein accession | YP_531665 |
Protein GI | 90423295 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.495648 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0540885 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGTCAGA TCGTGCCACC CCAGTGGAAG ACCAAGATCC GGCATTTCTT GCTGGATTTC GATGCGCGCA TTGATTCCAC GCTGTTTTCT TCGCTGGTCG GGTTGCGCGA ACTGTACGAG CGGTTCTCCA CCTTCATGGA CCGCTTCCAT GTCGGCCGCT GGAAGCGCTG GGTGTTCATC GAGCCGTTGT CGGAGGCCGC CACCATCGGG CTGTGCGGAC TGATCCTGAT GCTGGCGCTT GCAGTGCCGG CGTTCCGCGA GACCGCCGAC GACGACTGGC TGAAGAAATC CGATCTGGCG GTGAGCTTCC TCGATCGCTA CGGCAATCCG ATCGGCAATC GCGGCATCAA GCACAACGAC TCGATCCCGC TGGAAGACTT CCCGGACAAT CTGATCAAGG CGACGCTCGC CACCGAAGAC CGCCGCTTCT ACGATCATTT CGGCATCGAC ATCGCCGGCA CCGCGCGCGC GCTGGTTACC AACGCGCAGG CCGGCGGCGT GCGCCAGGGC GGCTCCTCGA TCACCCAGCA ACTCGCCAAG AACCTGTTCC TGTCGAACGA GCGCACCATC GAGCGCAAGG TCAACGAGGC GTTCCTGGCG ATCTGGCTGG AGACCCGGCT GACCAAGAAC GAAATCCTCA AGCTCTATCT CGACCGCGCC TATATGGGCG GCGGCACTTT CGGCGTCGAC GGCGCGGCGC ATTTCTACTT CAACAAGTCG GCGCGCGACG TCAATCTCGC GGAGTCCGCG ATGCTGGCCG GGCTGTTCAA GGCGCCGACT AAATACGCCC CGCACATCAA CCTGCCGGCG GCGCGCGCCC GCGCCAACGT GGTGCTCGAC AACATGGTCG AGGCCGGCTT CATGACCGAA GGCCAAGTGT TCGGCGCCCG GCGCAACCCC GCCACCGCGG TCGATCGCCG CGACGAGAAT TCGCCGAACT GGTATCTCGA CTGGGCGTTC GACGAGATGC GCAAGCTGGT CGACACCTTT CCGAAATCCT ATGTCGAGCG GGTGTTCGTG GTGCGCACCG CGATCGACAT GAACGTGCAG CGCGCCGCCG AAGCCGCGAT CGAAGACCAG CTGCGGCAAT TCGGTCGCGA CTATCACGCG ACGCAAGCCG CCACCGTGGT GTCCGATCTC GACGGCGGCA TCCGCGCCAT GGTCGGCGGC CGCGATTACG GCGCCAGCCA GTTCAACCGC GCCGTCGACG CCTATCGGCA GCCGGGTTCG TCGTTCAAGC CTTATGTCTA CACCACCGCG CTGCTGAACG GCTTCAAGCC GACCTCGATC GTGGTCGACG GCCCGGTGTG CATTGGCAAT TGGTGCCCGC AGAACTACGG CCACTCTTAT TCCGGCGCGG TGACGCTGAC CCAGGCGATC ACCCATTCGA TCAACGTGGT GCCGGTGAAG TTGTCGATCG CGCTCGGCGG CAAGTCGCCG AACCCGGCCA AGGCCGGCCG CGCCAAGATC GTCGAAGTGG CGCGGCGCTT CGGCATCAAG GCGCCGCTGC CGGATACGCC GTCGCTGCCG ATCGGCGCCG ACGAAGTCAC CGTGCTGGAG CACGCGGTGG CCTACGCCAC CTTCCCCAAC AAAGGCCGCT CGGTGACGCC GCATGCGGTG CTGGAAGTCC GCACCGGCGC CGGCGATCTG GTGTGGCGGT TCGACCGCGA CGGCAAGAAG CCGCTGCAGG CGATCCCCGC CTCGGTCGCC GCCGACATGG CGGGGATGAT GAGCCACGTC GTCAGTGAAG GCACCGCGCG GCGCGCCGCG CTCGACGGCA TTCCGACCGC CGGCAAGACC GGCACCACCA ATGCGTATCG CGACGCCTGG TTCGTCGGCT ACACCGGCAA CTTCAGCTGC GCGGTGTGGT ACGGCAACGA CGACTACTCG CCGACCAACC GGCTGACCGG CGGCTCGCTG CCGGCGCAGA CTTGGCACGA CATCATGCTG GCGGCGCATC AGGGCGTCGA GATCCGCGAA ATTGCCGGCA TCGGCGCCGG CACCAAGCTG CCGCCGACCG CCGCCAACGC CGCCGCCAAC CTCGCCTCGA AGACCCCCGA CACCCGGCAA GGCCCGCCGC CGATCCTGAC CCGGCGCGGC GCCGATATCC TGGTGCGGGT CGAAAAGATG TTTGACGAGG TCAGCAAGAC GCTCAACAAG CTTCCGCCGG GCGAACCGGT CAAGCCGGTG TCCTCCACCT CCGTCGCGTT CCCGGACAGC TTCGCCTCAG CAACGCGCAG CGACCCCGCG GGTGCTGCGC CGCGCAAGAA TTGA
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Protein sequence | MRQIVPPQWK TKIRHFLLDF DARIDSTLFS SLVGLRELYE RFSTFMDRFH VGRWKRWVFI EPLSEAATIG LCGLILMLAL AVPAFRETAD DDWLKKSDLA VSFLDRYGNP IGNRGIKHND SIPLEDFPDN LIKATLATED RRFYDHFGID IAGTARALVT NAQAGGVRQG GSSITQQLAK NLFLSNERTI ERKVNEAFLA IWLETRLTKN EILKLYLDRA YMGGGTFGVD GAAHFYFNKS ARDVNLAESA MLAGLFKAPT KYAPHINLPA ARARANVVLD NMVEAGFMTE GQVFGARRNP ATAVDRRDEN SPNWYLDWAF DEMRKLVDTF PKSYVERVFV VRTAIDMNVQ RAAEAAIEDQ LRQFGRDYHA TQAATVVSDL DGGIRAMVGG RDYGASQFNR AVDAYRQPGS SFKPYVYTTA LLNGFKPTSI VVDGPVCIGN WCPQNYGHSY SGAVTLTQAI THSINVVPVK LSIALGGKSP NPAKAGRAKI VEVARRFGIK APLPDTPSLP IGADEVTVLE HAVAYATFPN KGRSVTPHAV LEVRTGAGDL VWRFDRDGKK PLQAIPASVA ADMAGMMSHV VSEGTARRAA LDGIPTAGKT GTTNAYRDAW FVGYTGNFSC AVWYGNDDYS PTNRLTGGSL PAQTWHDIML AAHQGVEIRE IAGIGAGTKL PPTAANAAAN LASKTPDTRQ GPPPILTRRG ADILVRVEKM FDEVSKTLNK LPPGEPVKPV SSTSVAFPDS FASATRSDPA GAAPRKN
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