| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1768 |
|---|
| Symbol | |
|---|
| ID | 3972207 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1919324 |
|---|
| End bp | 1920892 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637924881 |
|---|
| Product | protein of unknown function DUF853, NPT hydrolase putative |
|---|
| Protein accession | YP_531646 |
|---|
| Protein GI | 90423276 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0433] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.307535 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAGCA CCAAGAGTGG TATCGAAGAT ACCGACGAAG CGATTTTCAT CGGCAAGATA
ACCGAGATAG CTTGGCTCAG GCTTGCGCTC GCCAATCGCC ACGGTCTGGT CACCGGCGCC
ACCGGAACCG GAAAGACGGT GTCGCTGCAG GTGATGGCGG AAGGCTTCGC GCGCGCCGGA
GTTCCGGTGT TCGCCGCCGA CATCAAGGGC GACCTCTCGG GAATCTCCCA GGTCGGTGAG
GCTAAAGACT TTATTTTGCA GCGCGCCAAA GCGATGGGGC TCGCGTTTCA GCCCGACCAG
TTCACCACGG TGTTTTGGGA CGTGTTCGGC GAGCAGGGTC ATCCGGTGCG AGCCACTGTG
TCTGAAATGG GCCCGTTGTT GCTGTCGCGG ATGATGGACC TCAACGATGT GCAGGAAGGC
GTGCTCAACA TCGCGTTCCG GGTTGCCGAC GAGCAGGGGC TGTTGCTGCT CGACATGAAA
GACCTGCGCG CGATGCTGTC GTTCATCGCC GAGCACGCCG CCGAATTGAC CACGCAATAC
GGCAATGTCT CCAAGCAAAG CGTCGGCACC ATTCAGCGGC AATTGCTGGT GTTGGAAAAT
CAGGGCGCCG CGCAATTCTT CGGCGAGCCG GCGCTGGCGC TGAAGGATTT CATGCGCACC
GATCGCGACG GCCGCGGCAA TATCAACATC CTGGTGGCGG ACCGATTGAT GCAGTCGCCG
CAACTCTATG CCAGCTTCCT GTTGTGGATG TTGTCGGAAC TTTACGAACA ATTGCCCGAG
GCCGGCGATC TGGCGAAGCC GAAGCTGGTG TTCTTTTTCG ACGAGGCGCA TCTGTTGTTC
AACGACGCGC CGAAGGGATT GATGGACAAG GTCGAGCAGG TGGTGCGGCT GATCCGATCG
AAGGGCGTCG GCGTCTACTT CGTGACGCAG AATCCGATCG ACGTGCCGGA CAAGGTTTTG
GCGCAACTCG GCAACCGCGT GCAGCACGCG TTGCGTGCGT TCACGCCGCG CGATCAGAAG
GCGGTCGCCG CCGCGGCAGA GACCTTCCGC CCCAATCCGA AGCTCGACAC CGCGCAAGTG
ATCACCGAAC TCGGCAAGGG CGAGGCACTG GTGTCGTTCC TCGAAGGCAA CGGCACGCCG
GCGATGGTGG AGCGCATCAT GGTGCGGCCG CCCTCGGCGC GGATCGGATC GATCACGCCG
GACGAGCGCA AGGCCATCAT CGATGCGAGC CCGGTGAAGG GCAAATACGA CACCGCGGTG
GATTCGGAAT CCGCTTATGA AATGCTGCAG CAGCGCGTCG GCGGCAGCGC CGCCGCCACC
GAAGCCGGCG GCGACGGCAG CGTGCTGGGA CAACTCGGCG CCATCGTCGG CACCATTTTC
GGCAGCAACG TACCGCGCGG CAAACGCTCC ACCGGGCAGG TGATCGCGCG CGACGTCACC
CGCACCGTAA CTAACAAGGT GGTCGGCGGC GTGATGGCGG ATCTCGGCAA ATCGCTTGGT
GGGTCGCTCG GCGGCTCGGT CGGGCGCGCC ATCGTCCGCG GCGCGCTCGG CAGTCTGCTG
CGGCGCTAG
|
|---|
| Protein sequence | MASTKSGIED TDEAIFIGKI TEIAWLRLAL ANRHGLVTGA TGTGKTVSLQ VMAEGFARAG
VPVFAADIKG DLSGISQVGE AKDFILQRAK AMGLAFQPDQ FTTVFWDVFG EQGHPVRATV
SEMGPLLLSR MMDLNDVQEG VLNIAFRVAD EQGLLLLDMK DLRAMLSFIA EHAAELTTQY
GNVSKQSVGT IQRQLLVLEN QGAAQFFGEP ALALKDFMRT DRDGRGNINI LVADRLMQSP
QLYASFLLWM LSELYEQLPE AGDLAKPKLV FFFDEAHLLF NDAPKGLMDK VEQVVRLIRS
KGVGVYFVTQ NPIDVPDKVL AQLGNRVQHA LRAFTPRDQK AVAAAAETFR PNPKLDTAQV
ITELGKGEAL VSFLEGNGTP AMVERIMVRP PSARIGSITP DERKAIIDAS PVKGKYDTAV
DSESAYEMLQ QRVGGSAAAT EAGGDGSVLG QLGAIVGTIF GSNVPRGKRS TGQVIARDVT
RTVTNKVVGG VMADLGKSLG GSLGGSVGRA IVRGALGSLL RR
|
|---|
| |