| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1734 |
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| Symbol | |
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| ID | 3972446 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 1886843 |
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| End bp | 1889227 |
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| Gene Length | 2385 bp |
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| Protein Length | 794 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637924847 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_531612 |
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| Protein GI | 90423242 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.587364 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.017359 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGATG ACGTATCGCA GATCGACACC AAAGTGCGGG CGCTGCGCAG GACGGTGAAT
GCGATTGCGT TGTCGCTGGT CGCCGCGATC ACCATCTTGG CGCCTTTGGG TTACGGTTTG
ATCGACTATC GCTATGAAGA AACCCACGCG TCGTTTCGCG CGAAACTGAG CGCCAGCCGG
GTCGCGCAAT ATATCTATCA GCATTCTCAA TTGTGGCAGT ATCAGACTGC CAGGATCGCC
GAGCTGATTC GGTTGACGGA ATTGCCGGAC AACGCCGGGC GTTATCGGGT GATCGATCAG
GCCGGCAAGG TGGTGCTTTC CGAGGACGCC GTGGCCGCTT ATGCCACGAT GACGCGGACG
GTCCCGATCT CCGTGGCCGG GGTCTCCATC GGCAGGGTCG AATTCACGGT GCCGCTGGAT
TCGATGATCC AGCGCCTCGG CATTGCGACG CTGCTCAGCC TGTTGCTGGC GCTCTGTGCC
TACGCCACGA TCCGCATCTT CCCGTTTCGC GTGCTGGACC GGGCGCTCGA GGGACTCGAT
AGCGCCCACC GCATGATCGT TGACAAGAAT GCCGCGCTGG AACAGCAAAA CCACGAGTTG
ATGGAGCGCG AGCAGGCGTT GCGATCGACC AAGGCGATGC TGCGGCAGCG CTCGGAGCAG
TTGCTCGAAG CCCAGCACCT CGGCAAGATC GGCGATTGGA GTTTCCGGCT CGGCGACAAA
ACATTATGGT GGTCCCCGGA GATCTATCAG CTGCTGGCCT ACGATCCGCA GAGCTTCCGC
CCCGAGCGGA ACGCGGTGAC GGCGCTTTAT GTCGGCGACA GCGCCCGCCG GCTGCAGCAG
GCGCAGGCCG AAGTGATGCG GACCGGATTG GTCAACAGCG TCGACATCAA GGTCAAACGC
GGCGATGGCT CGATCGGCGA CCTGGCGATC ACCAGCAAGG CGATGATCAA CGCCGACGGC
GGCATCATCG GCTTATCCGG AACGATCCAG GACATTTCCG CACGCAAGAG CGCCGAGGCG
CAGTTGGAGA AGCTGGCTTA CTACGATCCG CTCACCGGTC TCGCCAACCG CAGCCTATTT
CATCTTGAGA TCAGCGAGCT GATGGTCCGC AACCGACGAA CCGGGTCTGA CGCCGCGCTG
CTGCTGCTCG ATCTCGACGG CTTCAAGGAA ATCAACGACA CGCTCGGCCA CGGCGCCGGC
GACGAACTGT TGCGAAAGAT CGGGCAGCTG ATCTCGCAGG CGTTGGGGCC GGGCAACTTC
CTGTCCCGGC TTGGCGGCGA CGAATTCGCC ATCGTGCTGA GCCATCCGAC CCCGCGTTCC
GAAATCGAAC AGTTGGCGAC TACGTTGCTG GCGGCGATCG CCGGGCCGAT CGCACTGGAG
CGCGGCGAGG CCGCGATCAG CACCAGCATC GGCATCGCGA TGATTCCGCG CGACGGCAGC
ACTCTCAACG AGATCCTGCG CAGCGCCGAC CTGGCGCTGT ACCGCGCCAA GGAAGACGGC
CGCGGCCGCT ACCGATTCTT CGAAGCCGGA ATGAGCGCGG CGGTGCAGCA CAAGATGGCG
CTGAGCCGCG ATCTGCGCGC GGCGATCACC GACAATGTCG GGCTGTCGGT GCATTACCAA
CCGCAGATCG AACTTTCGAG CGACCGCGTC GCCGGATTCG AAGCGTTGAT GCGCTGGAGC
CATCCGACGC TCGGTAGCAT TTCGCCGGCG GAATTCATTC CGCTCGCGGA AAGCTCGCAC
CTGATCTGCG ATCTCGGACT CTGGATCCTG CGTGAAGCCG CGACCCAGGC CAAGCGCTGG
CTCGATGCCG GCGAGCCGCC GCGGGACATC GCGGTGAACG TCTCCGCAGC GCAGATCTGG
CATACCGACT TCGTCAGCGA CGTGGTCCGC GTGCTCGAGG ACACCGGGCT GCCGCCGCAT
CTGTTGTGCC TGGAGTTGAC CGAGAGCCTG CTCGCCGACC ACGCCGAGGG CCGGGTCCGC
AACGTGTTGA TGCAATTGAA GCGGCTCGGC GTCACGCTGG CGCTGGACGA CTTCGGCACC
GGCTATTCGT CGCTCGGCTA TCTCACCCAG TTGCCGTTCG ACAAGCTGAA GATCGACCGG
GTGTTCATCG ACGGCATCGC CGGCTCCGAG CGCAGCCGCA AATTGCTGCA AGGCGTCATT
GCGCTCGGCC GCGGCCTCGG CATGACCTTG GTGATGGAAG GCGTCGAGCG CGCCGAGGAA
GTCGATATTC TGCTCGAGTT CGATTGCGAC GTGGTGCAGG GCTTCTTCTT TGCGCGGCCG
ACGGTGGCCG CGACCGCGCT GGACTTCGCC CGCGCGTTCG ACGGCAAGGT CGAGCGGCGG
GCCGGCGCGG GATTCGAGAC GGCTGCGCGC GCCGCGGTGG GCTGA
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| Protein sequence | MSDDVSQIDT KVRALRRTVN AIALSLVAAI TILAPLGYGL IDYRYEETHA SFRAKLSASR
VAQYIYQHSQ LWQYQTARIA ELIRLTELPD NAGRYRVIDQ AGKVVLSEDA VAAYATMTRT
VPISVAGVSI GRVEFTVPLD SMIQRLGIAT LLSLLLALCA YATIRIFPFR VLDRALEGLD
SAHRMIVDKN AALEQQNHEL MEREQALRST KAMLRQRSEQ LLEAQHLGKI GDWSFRLGDK
TLWWSPEIYQ LLAYDPQSFR PERNAVTALY VGDSARRLQQ AQAEVMRTGL VNSVDIKVKR
GDGSIGDLAI TSKAMINADG GIIGLSGTIQ DISARKSAEA QLEKLAYYDP LTGLANRSLF
HLEISELMVR NRRTGSDAAL LLLDLDGFKE INDTLGHGAG DELLRKIGQL ISQALGPGNF
LSRLGGDEFA IVLSHPTPRS EIEQLATTLL AAIAGPIALE RGEAAISTSI GIAMIPRDGS
TLNEILRSAD LALYRAKEDG RGRYRFFEAG MSAAVQHKMA LSRDLRAAIT DNVGLSVHYQ
PQIELSSDRV AGFEALMRWS HPTLGSISPA EFIPLAESSH LICDLGLWIL REAATQAKRW
LDAGEPPRDI AVNVSAAQIW HTDFVSDVVR VLEDTGLPPH LLCLELTESL LADHAEGRVR
NVLMQLKRLG VTLALDDFGT GYSSLGYLTQ LPFDKLKIDR VFIDGIAGSE RSRKLLQGVI
ALGRGLGMTL VMEGVERAEE VDILLEFDCD VVQGFFFARP TVAATALDFA RAFDGKVERR
AGAGFETAAR AAVG
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