| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1726 |
|---|
| Symbol | ispH |
|---|
| ID | 3972379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 1872833 |
|---|
| End bp | 1873777 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637924839 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_531604 |
|---|
| Protein GI | 90423234 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0625482 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTATAATG TTCGTCCCCT TGAGGTTTTT CTGGCGCAGC CGCGCGGATT CTGTGCCGGC
GTGGTCCGCG CAATCGAAAT CGTGGAACGC GCGCTGGAGA AATACGGCCC GCCGGTCTAT
GTGCGACACG AAATCGTGCA CAACAAATAC GTCGTCGAAA GCCTGAAAGC CAAGGGCGCG
ATCTTTGTCG AGGACCTGTC TGAGGTTCCG CCCCAGGCGG TCACCGTGTT CAGCGCTCAT
GGGGTGGCCC GCAGCGTCGA GGAAGAGGCC GCCGCGCGCG GGCTTCCGGT GCTCAACGCC
ACCTGCCCGC TGGTCACCAA GGTGCACAAC CAGGGCAAGC GCTATATGTC CAAGGGCCGC
GCCCTGATCC TGATCGGGCA CGCCGGCCAT CCCGAGGTGG TGGGAACCAT GGGCCAGGTC
CCCGGGCCCG TGCTGCTGGT GCAGAACGTC GAGGACGTCG CCGCGCTGAC GCTGCCGGCC
GACACCCCGG TGGCCTACAT CACCCAGACC ACGCTCAGCG TCGACGACAC CAAGGACATC
ATCGCCGCGC TGGCGCAGCG GTTTTCCGAC ATCCAGGGAC CCGACATCCG GGATATCTGC
TATGCGACAC AGAACCGGCA ATCCGCGGTA AGAGACCTGT CCAAATTGGT CGATCTCATC
CTGGTGGTGG GCGCCACCAA CAGTTCCAAT TCCAACCGGC TTCGTGAGAT CGGCACCGAA
GTTGGAATTC CGAGCTACCT GATCGCCGAC GGCAGCGAAC TCAATCCGGA CTGGCTGAAA
GGCGTCAAAG CGGTCGGCAT CACCGCCGGC GCATCGGCCC CGGAGGTTCT GGTCGACGAC
GTGATCGAAG CGCTGCGGCG GATCGGACCG GTGGTGGTGT CGGTGCTGCC CGGGCGGGAA
GAAAACATCG AGTTTCTGCT GCCGGCCGAA TTAGCCCCGG CCTGA
|
|---|
| Protein sequence | MYNVRPLEVF LAQPRGFCAG VVRAIEIVER ALEKYGPPVY VRHEIVHNKY VVESLKAKGA
IFVEDLSEVP PQAVTVFSAH GVARSVEEEA AARGLPVLNA TCPLVTKVHN QGKRYMSKGR
ALILIGHAGH PEVVGTMGQV PGPVLLVQNV EDVAALTLPA DTPVAYITQT TLSVDDTKDI
IAALAQRFSD IQGPDIRDIC YATQNRQSAV RDLSKLVDLI LVVGATNSSN SNRLREIGTE
VGIPSYLIAD GSELNPDWLK GVKAVGITAG ASAPEVLVDD VIEALRRIGP VVVSVLPGRE
ENIEFLLPAE LAPA
|
|---|
| |