| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1720 |
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| Symbol | |
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| ID | 3972373 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1866578 |
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| End bp | 1868542 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637924833 |
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| Product | squalene cyclase |
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| Protein accession | YP_531598 |
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| Protein GI | 90423228 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0718096 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGTCCG GGAACAACAA GCAGCCCGCG GCGGCAATCG GCGCTCTCGA TGCGAGCATC
GAGAGCGCGA CCAACGCCTT GCTGGGCTAT CGGCAGCCCG ACGGGCACTG GGTGTTCGAA
CTTGAGGCCG ACTGCACCAT TCCTGCGGAA TACGTGCTGC TGCGGCATTA CCTCGGCGAG
CCGGTCGACG CCGCGTTGGA GGCCAAGATC GCCAACTATC TGCGCCGCGT GCAGGGCGCC
CATGGCGGCT GGCCGCTGGT GCACGACGGC GGCTTCGACA TGAGCGCCAG CGTCAAGGGC
TACTTCGCGC TGAAGATGAT CGGTGACGAC ATCGACGCGC CGCACATGGC GAAGGCGCGC
GAGGCGATCC GCTCGCGCGG CGGCGCGATC CACAGCAACG TGTTCACCCG CTTCCTGCTG
TCGATGTTCG GCATCACCAC CTGGCGCAGC GTGCCGGTGC TGCCGGTCGA GATCATGCTG
CTGCCGATGT GGTCGCCGTT CCATCTCAAC AAGATCTCCT ATTGGGCGCG CACCACCATC
GTGCCGCTGA TGGTGCTGGC GGCCTTGAAG CCGCGCGCGG TCAACCGGCT CGACATCGGA
CTCGACGAAC TGTTCTTGCA GGATCCGAAG TCGATCAAGA TGCCGGCCAA GGCGCCGCAT
CAGAGCTGGG CGCTGTTCAA GCTGTTCGCC GGCATCGATG CGGTGTTGCG CACGATCGAG
CCGTTGTTCC CGAAGCGGCT GCGCGATCAT GCGATCAAGC TCGCGGTGGA TTTCGTCGAG
GAGCGGCTGA ACGGCGAGGA CGGGCTCGGC GCGATCTATC CGCCGATGGC CAACACCGTG
ATGATGTACA AGGTGCTGGG CTTTCCCGAG GATCATCCGC CGCGCGCGAT CACCCGGCGC
GGCATCGACA AGCTGTTGGT GATCGGCGAG GACGAAGCCT ATTGCCAGCC TTGCGTGTCG
CCGGTGTGGG ACACCGCGCT GACCTGCCAC GCGCTGCTCG AAGTCGGCGG CGAGGCGGCG
GTGCCGCCGG CCAAGCGCGG TATGGACTGG CTGCTGCCCA AGCAGGTGCT CGACCTCAAG
GGCGACTGGG CGGTGAAGCG GCCGAACCTG CGGCCCGGCG GCTGGGCGTT CCAGTACAAC
AACGCGCACT ATCCAGACCT CGACGACACC GCGGTGGTGG TGATGGCGAT GGACCGCTCG
CGCCGCGCCA CCGGCAGCCG CGAATATGAC GAGGCGATCG CCCGGGCCCG GGAGTGGATC
GAGGGCATGC AGTCCGACGA CGGCGGCTGG GCGGCGTTCG ACGTCAACAA TCTGGAATAT
TACCTCAACA ACATCCCGTT CTCCGACCAC GGCGCGATGC TCGACCCGCC GACCGAGGAC
GTCACCGCGC GCTGTGTTTC GATGCTGTCA CAGCTCGGCG AGACCGCGGC GAGCAGCAAG
GCGGTCGCCG ACGGCGTCGA ATATCTGCGC AGGACTCAGC TGCCGGACGG CTCCTGGTAC
GGCCGCTGGG GGCTGAATTA CATCTACGGC ACCTGGTCGG TGCTGTGCGC GCTGAACGCC
GCCGGGGTCG ATCATCAGGA TCCGGTGATT CGCAAGGCGG TGACCTGGCT GGCTTCGGTC
CAGAACCCCG ACGGCGGTTG GGGCGAGGGT GCCGAGAGCT ACCGGCTGAA TTACACGCGA
TACGAGCAGG CGCCGACCAC CGCCTCGCAG ACCTCATGGG CTTTGCTCGG CCTGATGGCG
GCCGGTGAGG TGGATTCCCC CGTAGTTGCC CGCGGCGTGG AGTACCTAAA AAGCACACAG
ACCGGAAAAG GGCTCTGGGA CGAGCAGCGA TACACCGCGA CGGGCTTTCC GCGGGTGTTT
TATTTGCGTT ATCATGGCTA TGCGAAGTTC TTTCCGCTGT GGGCGCTGGC GCGGTATCGA
AACCTGAGGA GCACCAACAG TAAGGTGGTA GGGGTCGGGA TGTGA
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| Protein sequence | MESGNNKQPA AAIGALDASI ESATNALLGY RQPDGHWVFE LEADCTIPAE YVLLRHYLGE
PVDAALEAKI ANYLRRVQGA HGGWPLVHDG GFDMSASVKG YFALKMIGDD IDAPHMAKAR
EAIRSRGGAI HSNVFTRFLL SMFGITTWRS VPVLPVEIML LPMWSPFHLN KISYWARTTI
VPLMVLAALK PRAVNRLDIG LDELFLQDPK SIKMPAKAPH QSWALFKLFA GIDAVLRTIE
PLFPKRLRDH AIKLAVDFVE ERLNGEDGLG AIYPPMANTV MMYKVLGFPE DHPPRAITRR
GIDKLLVIGE DEAYCQPCVS PVWDTALTCH ALLEVGGEAA VPPAKRGMDW LLPKQVLDLK
GDWAVKRPNL RPGGWAFQYN NAHYPDLDDT AVVVMAMDRS RRATGSREYD EAIARAREWI
EGMQSDDGGW AAFDVNNLEY YLNNIPFSDH GAMLDPPTED VTARCVSMLS QLGETAASSK
AVADGVEYLR RTQLPDGSWY GRWGLNYIYG TWSVLCALNA AGVDHQDPVI RKAVTWLASV
QNPDGGWGEG AESYRLNYTR YEQAPTTASQ TSWALLGLMA AGEVDSPVVA RGVEYLKSTQ
TGKGLWDEQR YTATGFPRVF YLRYHGYAKF FPLWALARYR NLRSTNSKVV GVGM
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