| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1718 |
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| Symbol | |
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| ID | 3972371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1864426 |
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| End bp | 1865265 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637924831 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_531596 |
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| Protein GI | 90423226 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.150887 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.105129 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCAGC AAGCCACCTC CACGCCGGCG AAGCATCAGG GCGTCGCGCT GAGCAGTTCG
TTCTATGCGG CGATGCGCAT CCTGCCGCGC GAACAGCGCG AGGCGATGTT TCAGGTCTAT
AGTTTCTGCC GCTACGTCGA CGACATCGCG GATTCCGACG GTCCGCGTCC GCAGCGGCTG
GCGGATCTGC AGCAATGGCG CGACGACATC GAGGCGTTGT ATCGCGGCGC TCCGCCGCCG
CGGCTGCGCG ACTACACCGC GTCGCTGCAG CGCTTCGGAC TGAAGCAGCA GGATTTCCTC
GACATCATCG ACGGCATGGA AATGGACGTG CCGGCGGACA TTCGCGCCCC CGACGAGGCG
ACGCTCGATC TGTACTGCGA CCGCGTCGCC AGCGCGGTCG GCCGGCTGTC GGTGCGGATC
TTCGGGCTGC CGGAGGACGA CGGCGTCGCG CTGGCGCATC ACCTCGGCCG CGCGCTGCAA
TTGACCAACA TCCTGCGCGA CATCGACGAG GACGCCGGGA TTGGCCGGCT GTATCTGCCG
CGCGAAGGCC TGCTCGCCGT CGGCATCACC AGCACCGAGC CGCAGGCGGT GATCGCCGAC
CCGGCGCTGT CGCGGGTCTG CGTGCCGCTG GTGGCGCGGG CGCAGACGCA TTTCAAGCGC
GCCGACGAGG TGATGAACCG CAACCCGCGC CGGCTGGTGC GGGCGCCGCG GATCATGTCG
AAGTACTATC ACGCCATTCT GCAACTGTTG ATCGCGCGCG GATTCGATTT GCCGCGCGCG
CCGGTGAAAC TCGGCAAGGC CTCGCGGATC GCGATCCTGC TGCAATACGC GATCATCTGA
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| Protein sequence | MNQQATSTPA KHQGVALSSS FYAAMRILPR EQREAMFQVY SFCRYVDDIA DSDGPRPQRL
ADLQQWRDDI EALYRGAPPP RLRDYTASLQ RFGLKQQDFL DIIDGMEMDV PADIRAPDEA
TLDLYCDRVA SAVGRLSVRI FGLPEDDGVA LAHHLGRALQ LTNILRDIDE DAGIGRLYLP
REGLLAVGIT STEPQAVIAD PALSRVCVPL VARAQTHFKR ADEVMNRNPR RLVRAPRIMS
KYYHAILQLL IARGFDLPRA PVKLGKASRI AILLQYAII
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