| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1712 |
|---|
| Symbol | |
|---|
| ID | 3972365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1857007 |
|---|
| End bp | 1858593 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637924825 |
|---|
| Product | radical SAM family protein |
|---|
| Protein accession | YP_531590 |
|---|
| Protein GI | 90423220 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1032] Fe-S oxidoreductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.5358 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.03933 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGCTG AAGGTGGCCA GACGGCCCGA CGCATCCTGT GCGTGTTTCC ACGTTACACC
TCGTCGTTCG GCACCTTCGA ACACGCCTAT CCGCTGACCG ACGGCGTGCA GGCGTTCATG
CCGCCGCAGG GCATCCTGGT GATCGCGGCC TATTTGCCGG AGAATTGGGA GGTCCGCTTC
GTCGACGAAA ACATCCGCGC CGCCTCGGCC GAGGATTTCG AATGGGCGGA GGCGGTGTTC
GTCTCCGGCA TGCACATCCA GCGCAACCAG ATGAACGACA TCTGCCGGCG CGCGCACGCC
TTCGATCTCG CGGTGGCGAT CGGCGGGCCT TCGGTCAGCG CCTGTCCGGA TCATTATCCG
AGCTTCGATT ATCTGCACAT CGGCGAACTC GGCGACGCCA CCGACGCGTT GATCGCCCGG
CTGGCGCGCG ATCCGTCGCG GCCCGAGCAA CAGGTGGTGC TGCAGACCGA AGACCGTCTC
GACATGACGC TGTTTCCGAT TCCGGCCTAT GAGCTCGCGG AATGCAGCAA GTATTTTCTC
GGCAGCGTGC AATATTCCAG CGGCTGCCCC TATCAATGCG AGTTCTGCGA CATTCCGGGG
CTCTATGGCC GCAACCCGCG GCTGAAGACG CCGGAGCAGA TCGTCACCGA GCTCGACCGC
ATGCTGGAAT GCGGCATCCA GGGCTCGGTG TATTTCGTCG ATGACAATTT CATCGGCAAC
CGCAAGGCCG CGCTCGATCT GTTGCCGCAT CTCGTCGAGT GGCAGAAGAA GACCGGGTTC
TCGATCCGGC TGGCCTGCGA AGCCACGCTG AACATCGCCA AGCGCCCGGA AATCCTGCAA
TTGATGCGCG AGGCGTATTT CGTCACGATC TTCTGCGGCA TCGAGACCCC GGAGCCGGAC
GCGCTGCGGG CGATGCACAA GGACCACAAT ATGACGGTCC CGATCATGGA GGCGATCGAG
ACGCTGAACG GTTATGGCAT CGAGGTGGTC TCGGGAATCA TTCTCGGGCT CGACACCGAC
AAGCCGGACA CCGGCAAGAA CCTGCTGCAC TTCATCGCCG AATCGCAGAT TCCGCTGCTG
ACCATCAACC TCTTGCAGGC GCTGCCGAAG ACGCCGTTGT GGGACCGCCT GGAGCGCGAG
CATCGGCTGA TCGCCGACGA CGACCGCGAT TCCAACGTGG ATTTCCTGCT GCCCTATGAC
GACGTGGTGG CGACCTGGAA GGACTGCATG GCGGAGGCCT ATCAGCCCGA CAAGCTGTTG
GCGCGCTTCG AATATCAAAT CGAGCACACC TACGGCAACC GGCGGCGGTT GCCGGCGACG
CGGCAGCGCG CCTCCTTGGC CAACATCAAG CGCGGCCTGA TCATGATCCG CAACATCTTC
TGGCAGATCG GCGTCAAGGG CGATTATCGC CGGGCGTTCT GGAAATTTGC CTGGCGGCGG
ATGCGGCGCG GCGAGTTCGA GCATTTTATC AGCGTCATGT TGGTGGCGCA TCATCTGATC
GTCTACGCCC GACAGGCCTG CATCGGGCAG GCCACGGCCT CGAATTATTC GCTGCGGCTG
CGCGAAGCCG CGGTGCCTGC TGAATGA
|
|---|
| Protein sequence | MRAEGGQTAR RILCVFPRYT SSFGTFEHAY PLTDGVQAFM PPQGILVIAA YLPENWEVRF
VDENIRAASA EDFEWAEAVF VSGMHIQRNQ MNDICRRAHA FDLAVAIGGP SVSACPDHYP
SFDYLHIGEL GDATDALIAR LARDPSRPEQ QVVLQTEDRL DMTLFPIPAY ELAECSKYFL
GSVQYSSGCP YQCEFCDIPG LYGRNPRLKT PEQIVTELDR MLECGIQGSV YFVDDNFIGN
RKAALDLLPH LVEWQKKTGF SIRLACEATL NIAKRPEILQ LMREAYFVTI FCGIETPEPD
ALRAMHKDHN MTVPIMEAIE TLNGYGIEVV SGIILGLDTD KPDTGKNLLH FIAESQIPLL
TINLLQALPK TPLWDRLERE HRLIADDDRD SNVDFLLPYD DVVATWKDCM AEAYQPDKLL
ARFEYQIEHT YGNRRRLPAT RQRASLANIK RGLIMIRNIF WQIGVKGDYR RAFWKFAWRR
MRRGEFEHFI SVMLVAHHLI VYARQACIGQ ATASNYSLRL REAAVPAE
|
|---|
| |