Gene RPC_1707 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_1707 
Symbol 
ID3972534 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp1849888 
End bp1851087 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content68% 
IMG OID637924820 
ProductHI0933-like protein 
Protein accessionYP_531585 
Protein GI90423215 
COG category[R] General function prediction only 
COG ID[COG2081] Predicted flavoproteins 
TIGRFAM ID[TIGR00275] flavoprotein, HI0933 family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.105129 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAGC CCGGCGGCGC TGCAACGACC TATGACGTGA TCATTCTCGG CGCCGGCGCC 
GCGGGGCTGA TGTGCGCCGG CGTCGCGGCC AAGCGCGGCC GCTCGGTGCT GCTGATCGAG
CAAGGCCAGC ATCCCGGCGA AAAGATCCGG ATCTCCGGCG GCGGCCGCTG CAACTTCACC
AACCTCAACA CCACGCCGGC GAATTTCCAA TCGCAGAATC CGCGGTTCTG CCGCTCCGCG
CTGAGTAGCT ACACTCAGCA CGACTTCATC GCGCTGGTCG AGAAACACGG CATCGCCTAT
CACGAAAAAA CCCGCGGGCA ATTGTTCTGC GACGGCTCGG CCAAGCAGAT CATCGACATG
CTGCTGTCGG AATGCCGCGG CGGCGGGGTG CAGATCCGCT CCGGGATTCG CAGCCCGGCG
ATCGAGCGGA CCGCGGACGG CTTCACGCTG ACTACGGATC ACGGCCGGCT CGAGGGCCGC
GCGTTGGTGG TGGCGACCGG CGGGCCGTCG ATCCCGAAGA TCGGCGCCAG CGGCTTCGGC
TACAAGGTGG CCGAACAATT CGGGCTGACC ATCGTCCCTC CGCGCGCCGC CTTGGTGCCG
TTGACCTTTG CGCCGGCTGA GCTTGCGCAA TTTGCTGAAC TCTCCGGCAT CGCGGTCGAC
GCGGTGGTCG CCTGCGGCAA GGCGAAATTC GACGAGGCGC TGCTGTTCAC CCATCGCGGC
CTGAGCGGGC CGGCGATCCT GCAGATCTCC TCCTATTGGC GCGACGGCGA CGACATCGTC
ATCGACATGG CGCCGGGCAC CGACGTGTTG GCTGCGCTGA AACATGCGCG CCGCGAGCAT
CCGCGGCAAG AACTGGCGGC GGCGTTCGGC GCCCTGTTGC CGAAGCGGCT GGCGCAGGCC
ATTGCCGAGC GGCTCGGCAA GCCGGCGCGG ATCGCCGACT GTTCCGACAA GGTGCTGGCG
GCCGCCGCCG CCGCGGTGCA GCAATGGCGG CTCAAGCCCA ACGGCACCGA GGGCTATCGC
ACCGCCGAGG TGACGCTGGG CGGGGTGGAT ACCAGCGAGT TGTCGTCGAA AACCTTCGAG
GCGCGCAGCG TTCCGGGGCT GTATTTCATC GGCGAGGTGG TCGACGTCAC CGGCCAACTC
GGCGGCTTCA ATTTCCAATG GGCGTGGTCG TCAGGCGTCG CGGCCGGCCG GGCCGTGTAG
 
Protein sequence
MSKPGGAATT YDVIILGAGA AGLMCAGVAA KRGRSVLLIE QGQHPGEKIR ISGGGRCNFT 
NLNTTPANFQ SQNPRFCRSA LSSYTQHDFI ALVEKHGIAY HEKTRGQLFC DGSAKQIIDM
LLSECRGGGV QIRSGIRSPA IERTADGFTL TTDHGRLEGR ALVVATGGPS IPKIGASGFG
YKVAEQFGLT IVPPRAALVP LTFAPAELAQ FAELSGIAVD AVVACGKAKF DEALLFTHRG
LSGPAILQIS SYWRDGDDIV IDMAPGTDVL AALKHARREH PRQELAAAFG ALLPKRLAQA
IAERLGKPAR IADCSDKVLA AAAAAVQQWR LKPNGTEGYR TAEVTLGGVD TSELSSKTFE
ARSVPGLYFI GEVVDVTGQL GGFNFQWAWS SGVAAGRAV