| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1650 |
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| Symbol | |
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| ID | 3972884 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1782449 |
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| End bp | 1783642 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637924766 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_531531 |
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| Protein GI | 90423161 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATTG CAGCAGACTC GCCAAATTCG GCGCGAGCCC TCGAGGAAAA ACCGCGCCCG
CGTCCGGTAC GGATGACCCG TTGGTTCATC ATCGTAGGCG TCTTGCTGGC GCTTTTGGTC
GGCGGCATCG TCGGCTTCAA CGCGTTTCGC AATCACATGA TTGCGCAGTT CTTCGCCAAC
AATAAGCCGC CGCCGACCAG CGTCACCGTG GCCGAAGCCA AGTCCCAGGT GATCCCGAAT
CTGCTGATCG CGGTCGGCGA CCTCGCCGCC GTGCATCAGG TCAACGTCAC CTCCGACGTC
AACGGCCGGA TCACCGACAT CATGTTCACC GCCGGCGCCG TCGTGAAGGC GGGCAGCCCG
CTGGTGCAAT TGTTCGACGA ACCCGACCGC GCCGACCTCG CCAGCTTCAA GGCGCAGGCC
ACCGTCGCGC AACTGTCGCT CGACCGCGCC AAGCAATTGG CGGCGCGCCA GTTCGGGCCG
CAGGCCACGG TGGATTCGGC GCAGGCCGCG TTCGACCAAG CCAATGCCGG CATTGCCAAG
ACCGAGGCGA TCATTTCGCA GAAGCTGGTG CGCGCGCCGT TCGACGGCGT GCTCGGCGTC
CGCCATGCCG AAGTCGGCCA ATTTCTCACC GCCGGCACCC AGATCGTGAC GCTGACCGAT
CTGTCGGCGG TCTATGCCAA CTTCACCGTC ACCGAGAAGG ATTCCGGCAC GCTCAAGGTC
GGGCAGGTGG TGCGCGTCGC GGTCGATGCC TATCCGGGCA AGGTGTTCGA GGGCAAGATC
ACCACCATCG AACCGCAGAT CAACACCGAC ACCCGCAACA TCCGGGTGCA GGCCACGATC
CAGAACCCCG ACCACATCCT GAAGCCCGGC ATGTTCGCCA CCACCACGGT GGTGCTGCCG
GACAAGCCGG CGGTGATCAC CGTTCCGGAG ACCGCGGTCG ACTACACGCT GTATGGCGAC
GCGGTGTATC TGATCACGCC GAAGAAGGCC GAGGACGACA CCGAGAGCCT GACCGCGGTG
CGCACCTTCG TCCGCACCGG CGATCGGTCG AACGGCCAGG CGGTGATCCA GAGCGGGCTG
AAGCCCGGCG ACCGCGTGGT CGCGGTCGGC CAATTGAAGC TGCAATCCGG CGCCGCAGTA
GCGATTTCGA CGGATCCGGC GCCGCCGATT CCGGCGACGA CGCCGCGGAA CTAA
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| Protein sequence | MTIAADSPNS ARALEEKPRP RPVRMTRWFI IVGVLLALLV GGIVGFNAFR NHMIAQFFAN
NKPPPTSVTV AEAKSQVIPN LLIAVGDLAA VHQVNVTSDV NGRITDIMFT AGAVVKAGSP
LVQLFDEPDR ADLASFKAQA TVAQLSLDRA KQLAARQFGP QATVDSAQAA FDQANAGIAK
TEAIISQKLV RAPFDGVLGV RHAEVGQFLT AGTQIVTLTD LSAVYANFTV TEKDSGTLKV
GQVVRVAVDA YPGKVFEGKI TTIEPQINTD TRNIRVQATI QNPDHILKPG MFATTTVVLP
DKPAVITVPE TAVDYTLYGD AVYLITPKKA EDDTESLTAV RTFVRTGDRS NGQAVIQSGL
KPGDRVVAVG QLKLQSGAAV AISTDPAPPI PATTPRN
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