| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1603 |
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| Symbol | rpsD |
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| ID | 3973142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 1737951 |
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| End bp | 1738568 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637924719 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_531484 |
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| Protein GI | 90423114 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.176255 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAAAGC GCAGTGAAGC GAAGTATAAA ATCGACCGCC GGATGGGCCA GAATATCTGG
GGCCGTCCGA AGAGCCCGGT CAACCGCCGC GAATACGGCC CCGGCCAGCA CGGCCAGCGC
CGCAAGGGCA AGCTCTCCGA CTTCGGCGTG CAGCTGCGCG CCAAGCAGAA GCTGAAGGGC
TATTACGCCA ACATTTCCGA GCGCCAGTTC CACTCGATCT ACGTCGAGGC GACGAGGCTC
AAGGGCGACT CCGGCGAGAA CCTGATCGGC CTGTTGGAGC GCCGGCTCGA CACCGTGGTG
TATCGCGCCA AGTTCGTCTC CACGATGTTC GCCGCCCGCC AGTTCATCAA CCACGGCCAC
GTCAAGGTGA ACGGCAAGCG CGTCAACATC GCGAGCTACA AGGTCAAGGT CGGCGACCTC
GTCGAGGTCA AGGAATCCTC CAAGCAGCTC ACCTTCGTGC TGGAAGCCAA CCAACTCGCC
GAGCGCGACG TGCCGGACTT CATCGAAGTC GATCACGGCA AGATGACCGC GAAGTTCATC
CGCATCCCGC ATCTGTCGGA CGTGCCGTTC GCGGTGCAGA TGGAGCCGCA TCTGATCGTC
GAATTCTATT CGCGCTAA
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| Protein sequence | MTKRSEAKYK IDRRMGQNIW GRPKSPVNRR EYGPGQHGQR RKGKLSDFGV QLRAKQKLKG
YYANISERQF HSIYVEATRL KGDSGENLIG LLERRLDTVV YRAKFVSTMF AARQFINHGH
VKVNGKRVNI ASYKVKVGDL VEVKESSKQL TFVLEANQLA ERDVPDFIEV DHGKMTAKFI
RIPHLSDVPF AVQMEPHLIV EFYSR
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