| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1576 |
|---|
| Symbol | |
|---|
| ID | 3972924 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 1714899 |
|---|
| End bp | 1716122 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637924692 |
|---|
| Product | isocitrate dehydrogenase |
|---|
| Protein accession | YP_531457 |
|---|
| Protein GI | 90423087 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0538] Isocitrate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00127] isocitrate dehydrogenase, NADP-dependent, eukaryotic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00524741 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAAAA TCAAGGTGAC CAACCCCGTC GTCGAACTCG ACGGCGACGA GATGACCAGG
ATCATCTGGC AATACATCAA GGACAAGCTG ATCACCCCGT TCCTTGACAT TGACCTGATG
TATTTCGACC TCGGGATGGA GCACCGCGAC AAGACCGACG ATCAGGTCAC CATCGAGGCG
GCGAACGCCA TCAAGCAGGT CGGCGTCGGC GTCAAATGCG CCACCATCAC CCCGGACGAA
GCCCGGGTGA AGGAATTCGG CCTCAAGCAG ATGTGGAAAT CGCCGAACGG CACCATCCGC
AACATTTTGG GCGGCGTGAT CTTCCGCGAG CCGATCATCT GCAAGAACGT GCCCCGCCTG
GTGCCGGGCT GGACCAAGCC GATCATCATC GGCCGCCATG CCTACGGCGA TCAGTACCGC
GCCACCGACA TCAAGTTTCC CGGCAAGGGC ACGCTGACGA TGAAGTTCGT CGGCGAGGAC
GGCACCGTGA TCGAGCGCGA GGTGTTCCAG GCGCCCGGCG CCGGCGTCGC GATGGCGATG
TACAACCTCG ACGATTCGAT CCGCGATTTC GCGAGAGCCT CGCTGACCTA CGGCCTGAAC
CGCGGCTATC CGGTGTATCT GTCGACCAAG AACACCATCA TGAAGGTCTA TGACGGCCGC
TTCAAAGACA TCTTCGAAGA AATCTACAAT TCGGATTTCA AGAAGGACTT TGAGGCCAAG
GGGCTGACCT ACGAGCACCG CTTGATCGAC GACATGGTGG CCTCGGCGCT GAAATGGTCC
GGCGGCTACG TCTGGGCCTG CAAGAACTAC GACGGCGACG TGCAGTCCGA CACCGTGGCG
CAGGGCTACG GCTCGCTTGG ACTGATGACC TCGGTGCTGC TGACGCCCGA CGGCCAGGTG
GTGGAAGCCG AGGCCGCGCA CGGCACGGTG ACAAGGCACT ACCGCGAGCA CCAGAAGGGC
AAGGCGACCT CGACCAACTC CATCGCGTCG ATCTTCGCCT GGACGCAAGG CCTCGCCCAC
CGCGCCAAGC TCGACAACAA TGACGAACTG GCGAAGTTCT CCAAGACGCT GGAGCGGGTC
TGCGTCGAGA CGGTGGAAGC CGGCTACATG ACCAAGGATC TGGCGCTGTT GGTCGGCGCC
GACCAGCGCT GGCTGTCGAC CGAGGGCTTC CTCGACAAGG TCGCGGAAAA CCTCACCGCC
GCGATGGCGC CCGCCGCGGC GTGA
|
|---|
| Protein sequence | MAKIKVTNPV VELDGDEMTR IIWQYIKDKL ITPFLDIDLM YFDLGMEHRD KTDDQVTIEA
ANAIKQVGVG VKCATITPDE ARVKEFGLKQ MWKSPNGTIR NILGGVIFRE PIICKNVPRL
VPGWTKPIII GRHAYGDQYR ATDIKFPGKG TLTMKFVGED GTVIEREVFQ APGAGVAMAM
YNLDDSIRDF ARASLTYGLN RGYPVYLSTK NTIMKVYDGR FKDIFEEIYN SDFKKDFEAK
GLTYEHRLID DMVASALKWS GGYVWACKNY DGDVQSDTVA QGYGSLGLMT SVLLTPDGQV
VEAEAAHGTV TRHYREHQKG KATSTNSIAS IFAWTQGLAH RAKLDNNDEL AKFSKTLERV
CVETVEAGYM TKDLALLVGA DQRWLSTEGF LDKVAENLTA AMAPAAA
|
|---|
| |