| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1430 |
|---|
| Symbol | |
|---|
| ID | 3973698 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 1553709 |
|---|
| End bp | 1554788 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637924545 |
|---|
| Product | lipopolysaccharide heptosyltransferase II |
|---|
| Protein accession | YP_531311 |
|---|
| Protein GI | 90422941 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
|---|
| TIGRFAM ID | [TIGR02195] lipopolysaccharide heptosyltransferase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.433095 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTATG CTTCATTGTT ATCGGGATTG GCGACGGCGC GGGACCGGAC TGAGACCAGC
CCGGTGCTGC TGATCCCCTA TATGTGGATC GGCGATTTCG TCCGCTGCCA TACCGTGGTG
CGGGTCCTCA AGGACCGCTG GCCGGATCGT CCGGTCGACG TGCTGACCAC CTCGCTGTGC
GCGCCGCTGG TCGATTACAT GCCCGGGGTG CGCCAGGGCA TCGTCTGGGA CCTGCCGCGC
GGCCAGCTGG CGCTCGACCA GCAGCGGGCG CTGGCGGCCC GCTTCAGGGC GGAGCATTAC
GGCGCCGCGT TGGTGATGCC GCGGACCTTC AAATCCACCA TCGCGCCATG GCTTGCCGGT
ATCCCGCAAC GTACCGGCTT TATCGGCGAG GTCCGCTTCG GCCTGTTGAA CGACTGGCGC
CGCGGCGAAC GCGCGCTGCC GCGGATGATC GACCGCTGCG CCGCGCTGGC GCTGCCCGCC
GGTATCGAGC TGCCGATGGA TTGGCCGGAG CCGCAATTGC AGGTGCCAGC CGACGAGATC
GCCCGCTGGC GGCACGGCCG CGGGCTCGGC GAGCGCCCTG TGGTGGCGCT GGCGCCCGGC
GCGGTCGGCC CCTCCAAGCG CTGGAGCTAT TATCCCGACG CCGCGCAAGC GCTGACCGCG
CAGGGCTATG AGGTCTGGGT CATCGGCGGC CCCGGCGAAA CACCGGCGGC CGAGGCGATC
GTCGCCGCCG CGGGCCCGCT CGCCCGCGAC CTCACCGGCA AGGATTTGCG CGACGGCATT
CTGGCGCTGG CCGCCGCCGA TCTGGTGATT TCCAACGATT CGGGGCTGTT GCACGTGTCG
GCCGCGATCG GCCAGCCGAC CATCGGGATT TTCGGCCCGA CCAGCGCCTG GCATTACGCG
CCGCTCAACC CGATCACCGC GGTGATCGAG ACCAAGACCG AGGTGCCGTG CCGGCCCTGC
CACAAGCCGA CCTGCCGCAT GGTGCATCAC AAATGCATGC GCGACATTGC GGCCGGCGAC
GTCACCGAGG CGGCGTTTGC CGCGCTTGCC GAGGCCGGGC TGCCGGCGGC GCAACCATGA
|
|---|
| Protein sequence | MNYASLLSGL ATARDRTETS PVLLIPYMWI GDFVRCHTVV RVLKDRWPDR PVDVLTTSLC
APLVDYMPGV RQGIVWDLPR GQLALDQQRA LAARFRAEHY GAALVMPRTF KSTIAPWLAG
IPQRTGFIGE VRFGLLNDWR RGERALPRMI DRCAALALPA GIELPMDWPE PQLQVPADEI
ARWRHGRGLG ERPVVALAPG AVGPSKRWSY YPDAAQALTA QGYEVWVIGG PGETPAAEAI
VAAAGPLARD LTGKDLRDGI LALAAADLVI SNDSGLLHVS AAIGQPTIGI FGPTSAWHYA
PLNPITAVIE TKTEVPCRPC HKPTCRMVHH KCMRDIAAGD VTEAAFAALA EAGLPAAQP
|
|---|
| |