| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1405 |
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| Symbol | |
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| ID | 3973056 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1530641 |
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| End bp | 1532992 |
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| Gene Length | 2352 bp |
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| Protein Length | 783 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637924520 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_531286 |
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| Protein GI | 90422916 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.148044 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.749639 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATTTC GTCCCTCGCA ACACGCGTTG CTCGTCTGCT CGTTTGTCTC GTCGGCCTCG
CTTTTCGCCT TAAGCCTCGG CGGCACCGCG ATGGCGCAGG ACGCAGTGCC CGCCAATACG
CTGCCGGAGA TCAGGGTCAC CGCGCCGAGT CCGATCGTAA AGCGCAAGCC GGCGGCGGCG
CCCGCATCAT CTCGGGTCGC GCGCACGGCG CCGGCTCCCG CACGGGTCCC TGAGCCGGCA
GCGCTGCAGC AAGGCGTGCT CCCCATCGTC ACCGATCAGT TCGCCACCGT CACCGTGGTG
CCGAATGAAG AAATCCGCCG CGCCGGCGGC GCCACGCTCG GCGATCTGTT GAACTCAAAG
CCCGGCATCA CCGGATCGAG CTTTGCGCCC GGTGCCTCGA GCCGGCCGAT CATCCGCGGC
CTCGACGTCA ATCGCGTCGG CATCCTCGAG AACGGCACCG GCGCCGGCGG CGCGTCCGAT
CTCGGTGAAG ATCACTTCGT CCCGGTCGAT CCATTGGCCG CCGACCAGAT CGAAGTGATC
CGCGGACCGG CGGCGCTGCG CTACGGCTCG ACCTCGATCG GCGGCGTGGT CAGCACGACC
AACAACCGGA TTCCTGAGGC GCTGCCGGCC TGCGCCGCGG CGCCGTTCCA GAGCTACGGA
CTGCCGGTCA AAGCGCCTGT GGCAAACCTC GGGCAGCCTT CTTGCATGAA TGCCGAGACC
CGCACCGCGT TCAGTTCGGT CGATCGCGGC ATCGAAGGCG CCATCCTGCT CGACGCCGGC
GGCGGCAATG TCGCGCTGCA CGCCGACGCC TACGGCCGAC GGGCCGGCGA CTACGACATC
CCCGGCGCGC CCTATCTTGG CGATCCGTCG GTCAACCCCG GCCGGCAGCC GAATTCGGCG
GCGCGCGGCG ACGGCGTCTC GCTCGGCGGC TCGTATCTGT TCGACGGCGG CTTCATCGGC
GCCGCGGTGA CGCAGAACGA CGCGCTGTAT CACATCCCTG GCCGCGACGG CGCCGACCAC
CAGACCCGGA TCGATGCGCG GCAGACCAAA TTCACCGCCA AGGGCGAGTA TCGCCCTGAC
TCAGCGGCGA TCGAGGCGAT CCGGTTCTGG GCCGGCGCCA CCGACTACAA GCACAACGAG
ATCGGGCTGG CCGACACCAG CGATCCGACC ACCGACGGGG TGCGGCAGAC CTTCACCAAC
AAGGAGCAGG AAGCCCGCGT CGAATTGCAG ATGATGCCGT TCAACGCCCG CTTCGCCACG
GTGACCACCG CGTTCGGCCT GCAGGCCGGC CATCAGGAAT TGACCGCGCC GAGCCCGGAC
GATCCGGGCG CGCTGTACAA CGGGCTGTGG AATCCGAACC ACAACAGCCG CATCGCCGGC
TATGTGTTCA ACGAATTCGC GTTCAGCGCC GCGACCCGCG CGCAACTCGC CGGCCGCATC
GAGCACGTCG AACTGAGCGG CAGCACGCCG GACTTTCCGG CCGACTTCCT GCCCGACGGC
AGCGCGCAGT TCTCCAGCGA CCGCCACCTC AACTACACGC CAAAGAGCGG CAGCCTCGGG
CTGTTGCAGG ATCTGCCCGG CGGTCTGGTC GGCAGCATCA CCGCGCAATA TGTCGAGCGC
GCGCCGAAGC CCGCGGAATT ATTTTCGCGC GGCCCCCACG ATGCCACCGC GACCTTCGAC
ATCGGCAATC CGAACCTCAC CATCGAGACC GCCAAGACCG TCGAGATCGG ACTGCGCAAG
GCCACGGGGC CGCTGCGCTT CGAGGCCACC GCCTACTACA CGCGGTTCAA CAACTTCATC
TATCGGCGGC TGACCGGGGT GATGTGCGGC GAGGATTTCG ACTCCTGCGG CAACGGCGAT
CCGGAGAACG AGGGCCGCCA GGCGGTGTAT TCGCAGCGCG ACGCGATTTT CAAGGGCGGC
GAGTTTCAGA GCCAGCTCGA CGTCGCGCAG TTGTATGGCG GCACCTGGGG CGTCGAGACC
CAGTTCGACG TGGTGCGCGC CACCTTCACC GACGGCAGCA ACGTGCCGCG GATTCCGCCG
GTGCGCGCCG GCGGCGGGCT GTTCTGGCGC GACGCCAATT GGCTGACCCG GATCAACCTA
CTGCACGCCT TCGCGCATAA CGACATCGCG GCGATCGCCG AGACGCCGAC GCCCGGCTAC
AATCTGCTGA AGGCCGAGAT CAGCTACAAT ACCAAGCTCA ATCAAAGCTG GTTCGGCGCC
CGCGAAATGC TGGTCGGGCT GGTCGGCAAC AACCTGCTCA ACGAACCGAT CCGCAATTCG
GTGTCCTACA GCAAGGACGA CGTGCTGATG CCGGGCTTAG GCGTACGGGC GTTCGCGAAT
CTGAAGTTTT GA
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| Protein sequence | MSFRPSQHAL LVCSFVSSAS LFALSLGGTA MAQDAVPANT LPEIRVTAPS PIVKRKPAAA
PASSRVARTA PAPARVPEPA ALQQGVLPIV TDQFATVTVV PNEEIRRAGG ATLGDLLNSK
PGITGSSFAP GASSRPIIRG LDVNRVGILE NGTGAGGASD LGEDHFVPVD PLAADQIEVI
RGPAALRYGS TSIGGVVSTT NNRIPEALPA CAAAPFQSYG LPVKAPVANL GQPSCMNAET
RTAFSSVDRG IEGAILLDAG GGNVALHADA YGRRAGDYDI PGAPYLGDPS VNPGRQPNSA
ARGDGVSLGG SYLFDGGFIG AAVTQNDALY HIPGRDGADH QTRIDARQTK FTAKGEYRPD
SAAIEAIRFW AGATDYKHNE IGLADTSDPT TDGVRQTFTN KEQEARVELQ MMPFNARFAT
VTTAFGLQAG HQELTAPSPD DPGALYNGLW NPNHNSRIAG YVFNEFAFSA ATRAQLAGRI
EHVELSGSTP DFPADFLPDG SAQFSSDRHL NYTPKSGSLG LLQDLPGGLV GSITAQYVER
APKPAELFSR GPHDATATFD IGNPNLTIET AKTVEIGLRK ATGPLRFEAT AYYTRFNNFI
YRRLTGVMCG EDFDSCGNGD PENEGRQAVY SQRDAIFKGG EFQSQLDVAQ LYGGTWGVET
QFDVVRATFT DGSNVPRIPP VRAGGGLFWR DANWLTRINL LHAFAHNDIA AIAETPTPGY
NLLKAEISYN TKLNQSWFGA REMLVGLVGN NLLNEPIRNS VSYSKDDVLM PGLGVRAFAN
LKF
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