Gene RPC_1395 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_1395 
SymbolileS 
ID3973316 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp1521609 
End bp1524683 
Gene Length3075 bp 
Protein Length1024 aa 
Translation table11 
GC content64% 
IMG OID637924510 
Productisoleucyl-tRNA synthetase 
Protein accessionYP_531276 
Protein GI90422906 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0060] Isoleucyl-tRNA synthetase 
TIGRFAM ID[TIGR00392] isoleucyl-tRNA synthetase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.320728 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGACA CGCCTGTAAA ATCCGCCGCC AAAGACGCCC AAAAAGACGG CAACGACTAT 
TCCAAGACCC TGTACCTGCC GCAGACCGAG TTTCCGATGC GCGCCGGGCT GCCGAAGGCG
GAGCCCGAAC TGCTGAAGCG CTGGGAGGAG ATCGACCTCT ACGGCAAGCT GCGCAAGGCC
GCCGCCGGCC GGCCGAAATT CGTGCTGCAT GACGGCCCGC CCTATGCCAA CGGCAACATC
CATATCGGCC ACGCGCTGAA CAAGATCCTG AAAGACGTGG TGACCAAGAG CCAGCAGATG
CTGGGCTTCG ATTCCAACTA CGTGCCGGGC TGGGACTGCC ACGGTCTGCC GATCGAATGG
AAGATCGAGG AGGAGAATTA TCGCTCCAAG GGCAAGCCGA AGCCGAACTT CAAGGATAGC
GCGGCGATGG TCGCGTTCCG CAAGGAATGC CGTGGCTATG CCGGCAAATG GCTGAACGTG
CAGCGCGAGG AGTTCAAGCG GCTCGGCGTG ATCGGCGACT GGGCGCATCC CTACGCCACG
ATGGACTTCT TCGCCGAGGC GCAGATCGCC CGCGAACTGA TGAAATTCGC CGCCAACGGG
ACCCTCTATC GCGGCAGTAA GCCGGTGATG TGGAGCGTGG TGGAAAAGAC CGCGCTGGCC
GAGGCCGAGG TCGAGTATGA GGACTACACG TCGGATACGG TGTGGGTGAA GTTTCCGGTT
GTTACGCATG TCCCCGACAC TCACGTGACT CGGACGGGGA AGGTGCCCGT TGTCGACGGA
TATGATGATG GTCGTCTCGC GGGTTCATCA GTTGTCATCT GGACCACGAC GCCATGGACG
CTGCCGGGAA ACCGCGCGAT CAGCTTCTCA TCCAAAATCA GCTACGGCCT CTACAAAGTC
ACAGACGCTG CGGCTGATAA CTGGGCAAAA CCCGGCGATT TGTTGATCCT CGCCGACACG
CTTGCAGACG CCGTGTTCAA GCAGGCGCGC GTCGTGAGCT ATGAGAAGGT CAACACAGTT
CCCGCGGACG TGCTGAAGTC ATTGCAATGC GCCCATCCGC TGTTCGGCTT GGCCGGCGGC
TATGAATTCT CCGTGCCGCT GCTCGACGGC GATCACGTCA CCGACGACAC CGGCACCGGC
TTCGTCCACA CCGCGCCGGG CCACGGCCGC GAAGACTTCG ACATCTGGAT GCACAATGCG
CGCAGCCTAG AGGCGCGCGG CATCTCCTCG GCGATTCCCT ACACCGTCGA CGAGAACGGC
GCGCTGACCG ATCACGCGCC GGGCTTCGTC GGCAAGCGGG TGATCACCGA CAAGGGCGAA
AAGGGCGACG CCAACGAGGC GGTGATCAAG GCCTTGATCG ACGCCGGCAT GTTGCTGGCG
CGCGGCCGCT TGAAGCATCA GTACCCGCAT TCCTGGCGCT CCAAGAAGCC GGTGATCTTC
CGCAACACCC CGCAATGGTT CATCGCGATG GACAAGGACA TCGTCGACGA CGGCAAGGCC
AAGCCGGGCG ATACCCTGCG CCATCGCGCG CTCGAGGCCA TCAAGGTCAC GCAATGGGTG
CCGGCCGCCG GGCAGAACCG CATCAACGGC ATGATCAACA CCAAGCCCGA CTGGGTGATC
TCGCGGCAGC GCGCCTGGGG CGTGCCGATC GCGGTGTTCG TGCGCGAGAA GGGCGACGGC
TCCGCCGAAA TCCTGATCGA CGAGACCGTC AATCTGCGGA TCGCGGAAGC CTTCATGAGC
GAGGGCGCCG ACGCCTGGTA TGCCGAAGGC GCGCGTGAGC GCTTCCTCGG CGAGCGCGCC
AAAGAGGAAT GGAAGAAAGT CGACGACATC TGCGACGTCT GGTTCGACTC CGGCTCCACC
CACGCCTTCG TGCTCGAAGA CCGGCAGAAC TTCCCGGGCC TCGCCGGCAT CCGGCGCAAG
GTCGATGGTG GCGACGACAC CGTGATGTAT CTCGAAGGCT CCGACCAGCA TCGCGGCTGG
TTCCAATCGT CGCTGCTGGA AAGCTGTGGC ACCCGCGGCC GCGCGCCCTA CGACATCGTG
CTGACCCACG GTTTCACGCT CGACGAGAAC GGGCGCAAAA TGTCCAAGTC GATCGGCAAT
ACCGTCGAGC CGCAGAAGGT GATCGCGCAA TCCGGCGCCG ACATCTTGCG GCTCTGGGTG
TGCGCCACCG ACTATGCCGA CGACCAGCGC ATCGGCGCGG AAATCCTCAA GACCACCATC
GAGACCTATC GCAAGCTGCG CAACTCGATC CGCTGGATGC TCGGCACGCT GGCTCACTTC
AAGCGGGCCG ACGCCGTGGC GTTCGACGAT ATGCCCGAAC TGGAAAGGCT GATGCTGCAC
GCGCTGGCGG CACAGGATGC CATCGTGCGC AAAGCCTATG AGGAGTTCGA CTACAAGACC
GTCGTCGCCT CGCTGGCCAA CTTCATGAAC ACCGAATTGT CGGCGTTCTA TTTCGACGTC
CGCAAGGACA CGCTGTATTG CGACGCGCCG TCGTCGCTGA CGCGCAAGGC GGCGCTGACC
GCGATCGACA TCATCTGCGA TGCCATCCTG AAATGGCTGG CGCCGGTGTT GTCGTTCACC
GCCGAGGAAG CCTGGCGGCT GTATCGGCCG GACGCCGAGC CGAGCGTGCA TCTGACGCTG
TTCCCGGAGG GCCTCGCGCC ATTCCGCGAC GATCAACTCG CCGCGAAGTG GGAGACCATC
CGCAACGTCC GCCGCGTCGT CACCGGCGCG CTGGAGGTCG AGCGGGCGGC GAAGCGGATC
GGCTCCTCGC TGGAAGCCTC GCCGCTGGTC TATGTGTCGG ATCAGGCGAT CTTCTCGACC
TTGTTCGACA TCGATCTCGC CGAAGTCTGC ATCACCTCGA ATGCCATGGT TTCGAACGCC
GAGGCCCCGG CCGAGGCGTT TCGGCTGCCC GACGTTCCCG GCGTCGCGGT GGTGGTGGAG
AAGGCCCAGG GCCAGAAATG CGCGCGCTCC TGGAAGATCC TGCCCACGGT CGGCGACGAT
CCGGACTATC CCGACGTCTC GCCGCGCGAC GCGCAGGCGC TGCGCGAATG GCAGGCGCTG
GGGGTCACAG TATAA
 
Protein sequence
MSDTPVKSAA KDAQKDGNDY SKTLYLPQTE FPMRAGLPKA EPELLKRWEE IDLYGKLRKA 
AAGRPKFVLH DGPPYANGNI HIGHALNKIL KDVVTKSQQM LGFDSNYVPG WDCHGLPIEW
KIEEENYRSK GKPKPNFKDS AAMVAFRKEC RGYAGKWLNV QREEFKRLGV IGDWAHPYAT
MDFFAEAQIA RELMKFAANG TLYRGSKPVM WSVVEKTALA EAEVEYEDYT SDTVWVKFPV
VTHVPDTHVT RTGKVPVVDG YDDGRLAGSS VVIWTTTPWT LPGNRAISFS SKISYGLYKV
TDAAADNWAK PGDLLILADT LADAVFKQAR VVSYEKVNTV PADVLKSLQC AHPLFGLAGG
YEFSVPLLDG DHVTDDTGTG FVHTAPGHGR EDFDIWMHNA RSLEARGISS AIPYTVDENG
ALTDHAPGFV GKRVITDKGE KGDANEAVIK ALIDAGMLLA RGRLKHQYPH SWRSKKPVIF
RNTPQWFIAM DKDIVDDGKA KPGDTLRHRA LEAIKVTQWV PAAGQNRING MINTKPDWVI
SRQRAWGVPI AVFVREKGDG SAEILIDETV NLRIAEAFMS EGADAWYAEG ARERFLGERA
KEEWKKVDDI CDVWFDSGST HAFVLEDRQN FPGLAGIRRK VDGGDDTVMY LEGSDQHRGW
FQSSLLESCG TRGRAPYDIV LTHGFTLDEN GRKMSKSIGN TVEPQKVIAQ SGADILRLWV
CATDYADDQR IGAEILKTTI ETYRKLRNSI RWMLGTLAHF KRADAVAFDD MPELERLMLH
ALAAQDAIVR KAYEEFDYKT VVASLANFMN TELSAFYFDV RKDTLYCDAP SSLTRKAALT
AIDIICDAIL KWLAPVLSFT AEEAWRLYRP DAEPSVHLTL FPEGLAPFRD DQLAAKWETI
RNVRRVVTGA LEVERAAKRI GSSLEASPLV YVSDQAIFST LFDIDLAEVC ITSNAMVSNA
EAPAEAFRLP DVPGVAVVVE KAQGQKCARS WKILPTVGDD PDYPDVSPRD AQALREWQAL
GVTV