| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1356 |
|---|
| Symbol | |
|---|
| ID | 3972645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1478419 |
|---|
| End bp | 1479516 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637924471 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_531237 |
|---|
| Protein GI | 90422867 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.925373 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTGGA ATGTGCCCAC CCGTGGTCTG CTGCCGCCGC TGGCCGCGGT CGGTCTGGCG
CTGGCTCTCA GCGGCTGCGG CCAGAAAGAG GCTGCGAAGG CGCCGCCGCC CCGCCCGGTG
CTGGTGGCCA GTGTGCACTA CGCCGCGGAG GCGCCGGAGC GCAGCTTCGT CGGCACCATC
CGGCCGCGGA TCGAGGCCGA TATCGGCTTC CGGGTCGCCG GCAAGATCGC CAAACGGCTG
GTCGAGGTCG GTCAGAGCGT CGAGGTCGGC CAACCCTTGG CGCAGCTCGA CGAGGTGGAT
CTCAAGCTGC AGGCCGAGCA GGCCGAAGCC GAGCGCCGCG CCGCCACCGG CGTGCTGGCG
CAGGCCGCCG CCGCCGAGAA CCGCGCCAAG GAGCTGCGCG CCAAGGGCTG GGCCACCGAC
GCCCAGCTCG ATCAGGCCAA GGCCAGCGCC GACGAGGCCC GCGCCCGGCT CAATCGCGCC
GAGCGCTCGG TCGAACTCAC CAACAACAGC CTGTCCTACG CTACGCTCGT TGCCGACACC
CGCGGCGTGG TCACCGCGAC GCTGATCGAT GCCGGCCAGG TGGTGGCGGC CGGCCAGACC
GCGATCCGAG TGGCGCGTTT CGCCGAGAAG GAAGCCGTGG TGGCGATTCC GGAGACGCTG
ATCGGTCGGG CCAAGGACGG CACCGCCACG GTGACGCTGT GGTCGGACCC GAACCGGAAA
TACGCCGCGA AATTGCGCGA GATCGCGCCC AACGCCGATG CGGCGACCCG TACTTACCTG
GCGAAATTCT CGCTGCCCGA AGCCGGCGAC GAGGTCGCGC TCGGGATGAC CGCGACGCTG
ACGCTGGCCG ATCCGAACAC GCAACGGGTG GCGCGGCTGC CGCTGTCGGC GCTGTTCAAC
CAGGGCACCC AGCCGTCGTT CTACGTGGTC GATGATGCGG GCCAAGTCAC GTTGCAGCCG
GTGGCGGTCA AGGCCTACGA GACCACCGAC GTGCTGATCA GCGGCGGCGT CGCCGAGGGC
GCCAAGGTGG TGGTGCTTGG GGTGCAGAAA CTCGATCCGG CCGAGAAGGT CCGGGTCGTT
TCGGCGCTGA CGTTTTGA
|
|---|
| Protein sequence | MSWNVPTRGL LPPLAAVGLA LALSGCGQKE AAKAPPPRPV LVASVHYAAE APERSFVGTI
RPRIEADIGF RVAGKIAKRL VEVGQSVEVG QPLAQLDEVD LKLQAEQAEA ERRAATGVLA
QAAAAENRAK ELRAKGWATD AQLDQAKASA DEARARLNRA ERSVELTNNS LSYATLVADT
RGVVTATLID AGQVVAAGQT AIRVARFAEK EAVVAIPETL IGRAKDGTAT VTLWSDPNRK
YAAKLREIAP NADAATRTYL AKFSLPEAGD EVALGMTATL TLADPNTQRV ARLPLSALFN
QGTQPSFYVV DDAGQVTLQP VAVKAYETTD VLISGGVAEG AKVVVLGVQK LDPAEKVRVV
SALTF
|
|---|
| |