| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1350 |
|---|
| Symbol | |
|---|
| ID | 3972639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1470289 |
|---|
| End bp | 1471812 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637924465 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_531231 |
|---|
| Protein GI | 90422861 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.191133 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGAGT TCATCAGCCT CGACGCGCTG GTCCGCCAAA CCGCCGCCGA GGCGCCGCAG
CGCAGCGCGG TGATCGATGG CGACCGCACG ATCAACTACG CCGAATTCGA CGACCTGATC
GACCGCGTCG CAGCGTCCTT GCAGGCCGAC GGCTTGCAGC CGCGCGACGT GATCGCGATC
TGCGCGCTGA GTTCGATCGA ATATGTCGTG ACGTTCCTCG GTGCGCTGCG CGCCGGCGTC
GCGGTGGCAC CGTTGGCGCC GTCGTCCTTG CCGCGGGATT TCGCGGCGAT GCTCGAGGAT
TCCGGCGCCA AGATCCTGTT CATGGATGCG ACCACCATAG CTGCGATGGG CGACGCCGCG
CAGGCGGCGC TGCAAGTGTC GTTCGATGAC GCCGGCTGGG GCCGGCCGTT CAGCGCCTGG
TGCGCCGCGC CCGGCAGCAA GCCCAAGCCC ATCACCATCG ATCCGGAGTG GATCTTCAAC
ATCATCTATT CCTCCGGCAC CACAGGAACA CCCAAAGGCA TCGTGCACAC CCACGAGCTG
CGCTGGCGGC AATACGGCCA GATCGATCCG CTCGGCTTCG GCCCCGACGC CGTGACGCTG
TTGTCGACGC CGCTTTATTC CAACACCACG CTGGTGTGCT TCAACCCGAC CCTGGCCGGC
GGCGGCGGCC TCGTCCTGAT GAAGAAATTC GACGCCCGCG GCTTCTTGGA ATTGAGCGAG
ACGCATCGCG TCTCCTTCAC CATGCTGGTG CCGGTGCAGT ATCGCCGCAT CATGGCGCTG
CCGGATTTCG ACCGCTTCGA TCTGTCGTCC TACAAGATGA AGTTCTGCAC CTCGGCGCCG
TTCGCGGCCG AGCTCAAGGC CGACATCCTG AAGCGCTGGC CCGGCGGGCT GGTCGAATAT
TACGGCATGA CCGAAGGCGG CGGCTCCTGC GCGCTGCTCG CGCACGAGCA TCCCGACAAG
CTCGCCACCG TTGGCCGGCC GATGCCCGGC CACGAAGTGC GGCTGATCGA CGAGGAAGGG
CGGCAGGTCG CGGTCGGGCA GATCGGCGAG ATCGTCGGCC GCTCGCCGGT GATGATGCAG
GGTTATCTCA ACCAGCCGGG CAAGACCGCC GAGACCTTCT GGCACGACGC CGAGGGCAAC
CGCTTCGTGC GCACCGGCGA CATCGGCCGG TTCGACGACG ACGGCTTCCT CACCCTGATG
GACCGCAAGA AGGACATGAT CATTTCCGGC GGCTTCAACA TCTATCCCAG CGACATCGAG
GGCGTGCTCG CCGCGCATCC CGACGTCGTC GAGGTGGCGG TGGTCGGCAT GCCGTCGGAG
GAATGGGGCG AGACCCCGGT GGCGTTCGTG GTGCTGCGGG CCGACGCGTC GCTCGATGTC
GCTGCGTTGA AGGCCTGGAC CAACGCTCGG GTCGGCAAGA CCCAGCGGCT CAACGATCTC
GTCGTGGTGG AAAGCTTGCC GCGCAGCGCG ATCGGCAAGG TGTTGAAGCG CGAATTGCGC
GACCTGCGGC AAGCGGCGCA GTGA
|
|---|
| Protein sequence | MPEFISLDAL VRQTAAEAPQ RSAVIDGDRT INYAEFDDLI DRVAASLQAD GLQPRDVIAI
CALSSIEYVV TFLGALRAGV AVAPLAPSSL PRDFAAMLED SGAKILFMDA TTIAAMGDAA
QAALQVSFDD AGWGRPFSAW CAAPGSKPKP ITIDPEWIFN IIYSSGTTGT PKGIVHTHEL
RWRQYGQIDP LGFGPDAVTL LSTPLYSNTT LVCFNPTLAG GGGLVLMKKF DARGFLELSE
THRVSFTMLV PVQYRRIMAL PDFDRFDLSS YKMKFCTSAP FAAELKADIL KRWPGGLVEY
YGMTEGGGSC ALLAHEHPDK LATVGRPMPG HEVRLIDEEG RQVAVGQIGE IVGRSPVMMQ
GYLNQPGKTA ETFWHDAEGN RFVRTGDIGR FDDDGFLTLM DRKKDMIISG GFNIYPSDIE
GVLAAHPDVV EVAVVGMPSE EWGETPVAFV VLRADASLDV AALKAWTNAR VGKTQRLNDL
VVVESLPRSA IGKVLKRELR DLRQAAQ
|
|---|
| |