Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_1309 |
Symbol | |
ID | 3972511 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 1422479 |
End bp | 1424647 |
Gene Length | 2169 bp |
Protein Length | 722 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637924419 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_531190 |
Protein GI | 90422820 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.543635 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGTTCATG CCCACGCGCC CACTGCATTC GGAAAGGCTG ACCTTTCGAA TTGCGAGCGG GAGGAAATTC ATCTCGCGGG CTCGATTCAG CCGCACGGCG CGTTGCTGGT GGTCAGCGAG CCTGACCACT GCGTCATTCA GGCCAGCGCC AATGCTGCCG AGTTCCTGAA CCTCAAGCAG GTTCTCGGAA TGCCGTTGGC CGACCTCGAC GGCGACCTTC TCATTCAAAT CCTTCCACAT CTCGATCCCA CCGCCGAAGG CATGCCGATT GCGGTGCGCT GCCGTCTCGG CAATCCGGCG CTGGAGTTCG ATTGTCTGTT GCACCGGCCG CCCGAAGGCG GATTGATCGT CGAACTCGAA CGCGCCGGCT CCTCGCTCGA TCTGTTGGAA CAGATCGCGA CGGCACTCGA GGCGATTCGT TCGACCACCT CGCTCAGCGG GCTGTGTGAT CAGGCCGCCG CTTTGTATCG CGATCGCACC GGCTACGACC GGGTGATGGT TTACCGATTT GATGATGAAG GCCACGGCGA GGTGTTCTCG GAGCGCTGCC GATCGGATCT CGAGGCCTAT CTCGGCAACC GTTATCCGGC CTCCGATATT CCGCAGATGG CGCGCCGACT TTACGAGCAG ACCCGGGTTC GGGTGCTGGT CGACGTCAAT TACCAACCCG TTCCCTTGCA GCCGAGGTTG TCGCCACTGA CCGGGCGCGA ACTCGACATG TCGCGGTGTT TTCTCCGCAG CATGTCGCCG ATCCACTTGC AGTATCTGAA GAACATGGGC GTCCGCGCGA CGCTGGTGGT CTCGCTGATG GTCGGCGGAA AGCTGTGGGG CCTGATCGCC TGCCATCACT ACGAGCCCCG TTTCATCCAT TTCGAAATGC GGGCGGTGTG CGAGTTGCTT GCCGAGGCGA TCGCGACGCG CATCGTCGCG CTCGAAAGTT TTGCGCAGAG CCAGTCGGAG ATTTTCGTTC AGCGGCTCGA GCAACGGATG ATCGAAGCGA TCTCACGCGA GGGCGATTGG CGCGCCGGGG TTTTCGACAC GTCGCAGTCG ATCCTGCAAC CGCTTGGCGC CAGCGGCAGT GCGCTGATCT ATGAGGGGCA GGTCACGACC GCCGGCGAGG TGCCGGGCAC TCAGGACATT CGCGAGCTCG GCGCTTGGCT GGATCGCCAA CCTCGCACCG CGGTGATCTA CACCGCGGCG CTCGGAATCG AGGTTCCGGA GTTCGCCGGC CTGACCAAGG TGGCAAGCGG CATCGCCGCC ATCCCGGTTT CCAGCAATCC CGGCGAATAT CTGATCTGGT TCCGGCCGGA ACGCGTTCGC ACCGTGACCT GGGGCGGCGA CCCGCTGAAG CCGTTCGTGA TCGGCGACAA TCCGTCGGAT TTGTCGCCGC GACGCTCCTT TGCGCAGTGG CATCAGCTGG TGGAGGGAAC GTCGGAGCCA TGGGGCCCCG GCGACGTCGC AGCCGCGCGT GCGATCGGCG CGACGGTGGC CGATATCGTG CTGCAATTCC GTGCGGTACG CACCCTGATC GCGCAAGATC AGTTGGAGAA ATACAGCAGG CAAGTCGGCA TCTCGGATCA GCCGGTGATC ATCGCCGACA TCGAAGGCAA GATCCTGCTG ATCAACGATG CGTTTCGTTC GTTGCTGCCG AAGGATCACG TGCCCTCGCA GCGGCTGGAC AATCTGGCGG GCGCCTTCTG CAATCCCGAG GATTTTCTAC TCCGCGTCCA CGACCTCATC ACCCATCACC GCTCTTGGCG CGGCGAGATG CTGTTGCGCG GAGTAGGCAA CGAAGCAAAG CCGCTGCTGG TGCGGGCTGA TCCGGTTTTT CCCTCGAAGG ACCGCGTGCT GGGGTTCGTG TTGATCTTCG TGGATGTGAC GGATCGCAAG GCCGCCGAAG CGGCGCGCAG CCGGCTGCAG GAAGGCATCA TGAAGAGCCA TCGGGTCGGC AGCGTGCGTC TCGATACCAA GACCGACCTT ATCTACCAGA ACCTATTGTC GTCGGTGGTC GAGAACGCCC AGCTCGCGGC GTTGGAAATT ACCTACGGCG TCGAGACTAG CCGCATCGCC GGCATGCTCG AGAGCGTCCG CAATTCGACG CTGCGAACCG CCGAAGTGCT GCAGCACCTG ATCTGGCATT CGTCGCGGAC CTCCGGCGAC GACAAGTGA
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Protein sequence | MVHAHAPTAF GKADLSNCER EEIHLAGSIQ PHGALLVVSE PDHCVIQASA NAAEFLNLKQ VLGMPLADLD GDLLIQILPH LDPTAEGMPI AVRCRLGNPA LEFDCLLHRP PEGGLIVELE RAGSSLDLLE QIATALEAIR STTSLSGLCD QAAALYRDRT GYDRVMVYRF DDEGHGEVFS ERCRSDLEAY LGNRYPASDI PQMARRLYEQ TRVRVLVDVN YQPVPLQPRL SPLTGRELDM SRCFLRSMSP IHLQYLKNMG VRATLVVSLM VGGKLWGLIA CHHYEPRFIH FEMRAVCELL AEAIATRIVA LESFAQSQSE IFVQRLEQRM IEAISREGDW RAGVFDTSQS ILQPLGASGS ALIYEGQVTT AGEVPGTQDI RELGAWLDRQ PRTAVIYTAA LGIEVPEFAG LTKVASGIAA IPVSSNPGEY LIWFRPERVR TVTWGGDPLK PFVIGDNPSD LSPRRSFAQW HQLVEGTSEP WGPGDVAAAR AIGATVADIV LQFRAVRTLI AQDQLEKYSR QVGISDQPVI IADIEGKILL INDAFRSLLP KDHVPSQRLD NLAGAFCNPE DFLLRVHDLI THHRSWRGEM LLRGVGNEAK PLLVRADPVF PSKDRVLGFV LIFVDVTDRK AAEAARSRLQ EGIMKSHRVG SVRLDTKTDL IYQNLLSSVV ENAQLAALEI TYGVETSRIA GMLESVRNST LRTAEVLQHL IWHSSRTSGD DK
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