| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1308 |
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| Symbol | |
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| ID | 3972510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1421071 |
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| End bp | 1422477 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637924418 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_531189 |
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| Protein GI | 90422819 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR02040] transcriptional regulator PpsR |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.464609 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAGAAT CTGGCAAGGC AGTGGCCGAG ATCGCCACGA GACCAACGGG GCAGCCTGAT
CTGACCCTGC TGCTGGATAT GGACGGAATT ATCCGGGACG CGACCCTGTC GGGCGCAATG
GCCGGGGAGA GCATCGACGG TTGGCTCGGG CGGCCTTGGA GCGAGGTTGC CGGCGAGACC
GGCGGCGACA AGATCAAGCG GATGGTCGAC GACGCCCGCG CGATCGGATT TTCAGCGTTC
CGCCAAATCA ATCAAAGGTT TCCCAGCGGC GTTGAAATTC CCATGGAATT CACGACGATG
CTGCTCGGCG ACCAGGCCGG CATGTTGGTG CTGGGCAAGA ATCTGCAGGC CGTCGCCGAA
TTGCATGCGC GGCTGATTGC CGCCCAGCAG ACGATGGAGC GCGATTATTG GCGGCTGCGC
GAGGTCGAGA CCCGCTATCG GCTGGTGTTC GAGGCCTCGA ACGAAGCCGT GGTGATCGTC
TCACCGACGG ATCTGCGCAT CGTCGAGGCC AATCTCGCCG CGGTTCAGGC CTTGACCGGC
TTGCAACGCG GAAACGAAGA TCTCGCGGGC CGCGAGTTTT TGCTCGATAT CCGCCCGCAG
GATCGTGAGG CCGCCCGCGC CATGCTGTCG CGCGTGCGCG AGCGCGGTAA GGCGTTGAGC
ATTCTCGTGC ATCTGGGACC CTCGGCGCAA CCCTGGATGC TGCGTGGCGC GTTGATGCCC
TCGGAGCCCG GGCAGATTTT CCTGCTGCAC TTCACGCCGG CCGCGGTGTC CGCGCCGAGC
CCTGAGCAGA TCGAACATTC GGCGATCAAG GAACTGATCG ATCGGGTGCC CGACGGCTTT
GTCGCGCTCG ATGCGGCGGG GGGTGTACAG CATGCCAACC AGGCGTTTCT CGATCTGGTG
CAGGTCGGAA CGAAGGCGGC GGTGATCGGC GAATCGTTGG CGCGATGGCT TTCCCAGCCG
GGTGCGGACT GGAATGCATT GCTATCGCAG CTGCGGCGCT ACAAGACCGT TCGATTATTC
CGCACCACGC TTCGCGGCGA ACTCGGAAGC GAGACCGAAG TGGAAATCTC CGCCGTCGAC
GTCGATGGCG ACGAGCAAAG CTATGTCGGT GTGCTGCTTC GCAACGTCTC GCGCCGCTTT
AACGACGCCG TGGAAGGGGA TTCCCTCCGC ATGGCGTTAG GCCCGATCAG CGAGCAGCTT
GGCAGATCGT CGCTGCGCAA GCTGGTCAAG GATACCGTCA GCATCGTCGA ACAGCACTAC
GTCAAAGAAG CGCTGGAACA TGCCGGCGGG AACAGGACGG CGACAGCAGA ACTGCTGGGA
TTGAGCCGGC AAAGCCTTTA TGCCAAGCTG AACCGATACG GTCTCGACGA CCGCGAAGCG
GACACCCAGG ATATCTCAGA GGACTGA
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| Protein sequence | MTESGKAVAE IATRPTGQPD LTLLLDMDGI IRDATLSGAM AGESIDGWLG RPWSEVAGET
GGDKIKRMVD DARAIGFSAF RQINQRFPSG VEIPMEFTTM LLGDQAGMLV LGKNLQAVAE
LHARLIAAQQ TMERDYWRLR EVETRYRLVF EASNEAVVIV SPTDLRIVEA NLAAVQALTG
LQRGNEDLAG REFLLDIRPQ DREAARAMLS RVRERGKALS ILVHLGPSAQ PWMLRGALMP
SEPGQIFLLH FTPAAVSAPS PEQIEHSAIK ELIDRVPDGF VALDAAGGVQ HANQAFLDLV
QVGTKAAVIG ESLARWLSQP GADWNALLSQ LRRYKTVRLF RTTLRGELGS ETEVEISAVD
VDGDEQSYVG VLLRNVSRRF NDAVEGDSLR MALGPISEQL GRSSLRKLVK DTVSIVEQHY
VKEALEHAGG NRTATAELLG LSRQSLYAKL NRYGLDDREA DTQDISED
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